Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3149

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429143 to 430117 11516 mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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429,926 - 11516 mRNA_3148 0.80 0.2
430,048 + 0.9
430,050 + 2.1
430,050 + 0.2
430,054 + 1.5
430,090 - 0.3
430,179 - 2.8
430,180 - -1.9
430,181 - -0.3
430,187 + 1.3
430,191 - -1.2
430,192 + 0.0
430,196 + 1.6
430,198 + -1.0
430,208 + 0.3
430,227 + 1.0
430,227 + -0.3
430,286 - -0.6
430,302 - 0.5
430,308 - -0.3
430,309 + 3.3
430,312 - -0.4
430,317 - 3.0
430,321 - 1.0
430,330 - -2.3
430,340 - 1.7
430,382 - -0.1
430,385 + -0.7
430,393 - 2.7
430,427 - 0.1
430,433 + -0.5
430,448 + -0.1
430,454 - -1.0
430,457 + 0.9
430,458 + 0.8
430,471 - -0.0
430,472 - -1.3
430,477 - 0.1
430,478 + -0.3
430,483 + 0.5
430,484 + -0.2
430,484 + 0.8
430,485 + 0.0
430,485 + 1.4
430,486 + 1.4
430,494 - 0.4
430,494 - -0.4
430,497 + 0.9
430,497 + -1.0
430,497 + -0.9
430,500 + 0.3
430,502 + 0.4
430,526 - 1.1
430,534 - -0.8
430,542 - -0.9
430,542 - -1.5
430,543 - -0.1
430,545 - 0.3
430,545 - 0.4
430,546 + 0.1
430,546 + 0.6
430,546 - -0.0
430,553 - 0.5
430,553 - -0.6
430,553 - -0.1
430,555 - 2.0
430,555 - 3.0
430,557 - 2.3
430,557 - 0.1
430,558 + -2.2
430,558 + 1.4
430,561 + 2.3
430,562 + 0.5
430,567 - 0.0
430,569 - 0.2
430,569 + 0.3
430,569 - -1.8
430,573 - -0.5
430,573 - 0.0
430,573 - -0.3
430,575 - 2.8
430,576 + -0.9
430,577 - -0.3
430,577 + 0.7
430,578 + 1.6
430,579 + 0.1
430,584 - 0.8
430,585 - 0.3
430,587 + 0.3
430,588 + -0.2
430,588 - 0.3
430,593 - 0.2
430,594 + 0.9
430,596 - 0.3
430,596 + -1.6
430,597 + 1.6
430,601 - 1.0
430,605 + -1.4
430,605 - 1.0
430,606 + -0.5
430,606 - -0.5
430,609 - -0.1
430,615 + 0.3
430,620 + -0.4
430,622 + 0.7
430,629 - -1.3
430,638 - 0.5
430,640 - -1.6
430,644 + 0.3
430,644 - 0.2
430,645 - 1.6
430,645 + -0.1
430,646 + 0.8
430,657 - 0.6
430,658 + 1.1
430,670 - 0.2
430,685 - -1.2
430,705 + -0.5
430,707 + 1.4
430,714 - 0.3
430,717 + 1.4
430,723 - 0.2
430,729 + 0.3
430,733 - 0.2
430,741 - 0.8
430,743 - -0.5
430,745 - 0.1
430,745 - 0.2
430,745 - -1.4
430,748 - -2.0
430,748 - 0.1
430,748 - 1.1
430,752 - 1.9
430,752 - 1.5
430,769 + -0.6
430,774 + -0.0
430,794 - -0.0
430,806 - 0.3
430,813 + 1.5
430,821 + 3.0
430,826 + 0.9
430,828 + 0.1
430,830 - 1.9
430,832 - 1.5
430,835 + -1.3
430,835 + -0.7
430,836 - -0.6
430,837 + 2.0
430,838 + -1.0
430,845 - 1.4
430,846 - 1.3
430,847 + 1.2
430,849 - 0.1
430,850 + -0.1
430,852 - -0.9
430,852 - 0.6
430,853 - 0.3
430,853 - 1.3
430,857 + 1.9
430,868 - 1.2
430,871 - 1.3
430,872 - 0.6
430,872 + 1.8
430,874 - -0.0
430,874 - 1.1
430,876 + 1.2
430,876 - -0.7
430,877 + 1.0
430,877 + 2.8
430,877 - 0.7
430,881 - -0.4
430,882 + -1.6
430,884 + 2.0
430,887 + 0.4
430,894 - 0.6
430,908 - -0.1
430,909 - 1.1
430,911 - 1.1
430,921 - 1.0
430,923 - 1.5
430,924 + 0.9
430,924 + 2.4
430,928 - -0.5
430,930 - -1.1
430,937 + 1.9
430,938 + -0.2
430,940 + -0.4
430,940 + -2.4
430,941 + 0.8
430,951 + 0.5
430,956 + -0.1
430,962 - -0.1
430,964 - 0.1
430,964 + 2.8
430,964 - -0.7
430,968 - -0.1
430,970 + 1.3
430,974 + 0.3
430,976 + -0.3
430,977 + -0.1
430,978 - -0.4
430,978 - -0.1
430,978 - 1.1
430,979 + -0.5
430,979 + 1.0
430,999 + 0.5
431,003 - 0.5
431,003 - -0.9
431,008 - 0.0
431,010 - -0.2
431,012 - -2.9
431,012 - 1.1
431,016 - 0.5
431,016 - 0.8
431,023 + 0.1
431,024 - -1.5
431,027 - -1.2
431,028 + -0.3
431,029 - -0.3
431,031 - 0.6
431,031 - 0.6
431,032 + 0.6
431,033 - 2.0
431,040 - 0.5
431,041 + -0.3
431,049 + 1.4
431,052 - -0.6
431,052 - 1.3
431,063 - 2.8
431,065 - 0.5
431,066 + 1.2
431,066 + -0.1
431,084 - -0.8
431,087 - 0.4
431,089 + -0.5
431,101 - 0.0
431,110 - 0.6
431,110 + 1.9
431,114 + 0.8
431,120 - -0.6
431,120 + 0.2
431,122 - -1.4
431,143 - 0.1
431,150 - 1.4
431,158 - -1.2
431,159 - -0.3
431,169 - 0.0
431,190 + 0.4
431,193 + -1.8
431,196 - 0.1
431,214 - -0.9
431,237 - -0.9
431,244 + 11517 mRNA_3149 0.10 0.3
431,265 - 11517 mRNA_3149 0.11 0.2
431,275 + 11517 mRNA_3149 0.11 -0.1
431,285 + 11517 mRNA_3149 0.11 0.1
431,298 - 11517 mRNA_3149 0.12 1.4
431,310 - 11517 mRNA_3149 0.12 0.7
431,310 - 11517 mRNA_3149 0.12 -1.2
431,322 - 11517 mRNA_3149 0.12 0.4
431,323 - 11517 mRNA_3149 0.12 1.7
431,332 + 11517 mRNA_3149 0.13 -0.9
431,351 + 11517 mRNA_3149 0.13 0.5
431,376 + 11517 mRNA_3149 0.14 -1.0
431,456 - 11517 mRNA_3149 0.16 -0.5
431,471 + 11517 mRNA_3149 0.17 1.6
431,482 - 11517 mRNA_3149 0.17 -1.4
431,487 - 11517 mRNA_3149 0.17 1.4
431,487 - 11517 mRNA_3149 0.17 1.7
431,516 + 11517 mRNA_3149 0.18 0.8
431,605 + 11517 mRNA_3149 0.20 1.5
431,608 - 11517 mRNA_3149 0.20 1.5
431,614 - 11517 mRNA_3149 0.21 -1.2
431,625 - 11517 mRNA_3149 0.21 0.1
431,626 + 11517 mRNA_3149 0.21 0.5
431,735 + 11517 mRNA_3149 0.24 1.2
431,765 - 11517 mRNA_3149 0.25 0.2
431,899 - 11517 mRNA_3149 0.29 -1.1
431,920 - 11517 mRNA_3149 0.29 2.1
432,051 + 11517 mRNA_3149 0.33 -2.6
432,058 - 11517 mRNA_3149 0.33 2.5
432,090 - 11517 mRNA_3149 0.34 2.8
432,196 + 11517 mRNA_3149 0.37 0.2
432,310 + 11517 mRNA_3149 0.40 1.2
432,349 + 11517 mRNA_3149 0.41 0.0
432,361 + 11517 mRNA_3149 0.42 -0.7
432,471 + 11517 mRNA_3149 0.45 0.1
432,513 - 11517 mRNA_3149 0.46 0.8
432,747 - 11517 mRNA_3149 0.53 1.5
432,778 - 11517 mRNA_3149 0.54 -0.8
432,788 + 11517 mRNA_3149 0.54 0.2
432,790 - 11517 mRNA_3149 0.54 -0.7
432,800 + 11517 mRNA_3149 0.54 -0.3
432,883 - 11517 mRNA_3149 0.56 -1.0
432,886 - 11517 mRNA_3149 0.57 1.1
432,887 + 11517 mRNA_3149 0.57 -0.6
432,929 + 11517 mRNA_3149 0.58 0.4
432,945 - 11517 mRNA_3149 0.58 -0.8
432,959 - 11517 mRNA_3149 0.59 -0.4
432,969 + 11517 mRNA_3149 0.59 -2.1
433,396 + 11517 mRNA_3149 0.71 0.0
433,575 - 11517 mRNA_3149 0.76 -0.1
433,800 + 11517 mRNA_3149 0.82 0.2
433,811 - 11517 mRNA_3149 0.83 0.0
433,814 + 11517 mRNA_3149 0.83 -0.1
433,814 - 11517 mRNA_3149 0.83 0.2
434,112 + 1.6
434,119 - 0.9
434,238 - -0.3
434,255 - 1.5
434,278 - -0.4
434,296 - -0.1
434,379 + -1.6
434,393 + 3.4
434,395 + 0.3
434,395 - 0.5
434,399 - 1.0
434,400 - -1.5
434,514 - -0.7
434,518 + 1.2
434,524 + 0.0
434,531 - 1.1
434,541 + 3.3
434,544 + 0.4
434,544 - 1.3
434,644 - 0.2
434,665 + -1.0
434,671 + 0.5
434,672 - -0.9
434,675 - -1.3
434,677 - 0.7
434,689 - -0.5
434,689 + -0.6
434,691 + 0.1
434,694 + 0.0
434,699 + 0.9
434,720 - 0.1
434,757 - 0.8
434,817 - 0.8
434,819 + -0.0
434,836 + 2.0
434,865 + 1.0
434,978 + 1.4
434,983 - -0.1
434,992 + 0.4
434,997 - -0.1
435,105 - 0.2
435,109 - 0.2
435,123 - -0.9
435,407 + 11518 mRNA_3150 0.29 0.2