Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3148

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3147: 11515 - Hypothetical Protein, at 427660 to 428214 11515 mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429143 to 430117 11516 mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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428,288 + 0.8
428,409 + 0.8
428,688 + 1.3
428,699 + -1.1
428,702 + -1.2
428,707 + -2.5
428,798 - 0.2
428,799 + -0.9
428,829 - -0.1
428,855 + -1.5
428,867 - -0.2
429,000 - -0.1
429,009 + -0.5
429,261 - 11516 mRNA_3148 0.12 0.3
429,315 + 11516 mRNA_3148 0.18 3.5
429,580 - 11516 mRNA_3148 0.45 -0.4
429,584 + 11516 mRNA_3148 0.45 3.8
429,587 + 11516 mRNA_3148 0.46 -0.4
429,626 - 11516 mRNA_3148 0.50 -0.5
429,724 + 11516 mRNA_3148 0.60 1.6
429,883 + 11516 mRNA_3148 0.76 1.0
429,926 - 11516 mRNA_3148 0.80 0.2
430,048 + 0.9
430,050 + 2.1
430,050 + 0.2
430,054 + 1.5
430,090 - 0.3
430,179 - 2.8
430,180 - -1.9
430,181 - -0.3
430,187 + 1.3
430,191 - -1.2
430,192 + 0.0
430,196 + 1.6
430,198 + -1.0
430,208 + 0.3
430,227 + 1.0
430,227 + -0.3
430,286 - -0.6
430,302 - 0.5
430,308 - -0.3
430,309 + 3.3
430,312 - -0.4
430,317 - 3.0
430,321 - 1.0
430,330 - -2.3
430,340 - 1.7
430,382 - -0.1
430,385 + -0.7
430,393 - 2.7
430,427 - 0.1
430,433 + -0.5
430,448 + -0.1
430,454 - -1.0
430,457 + 0.9
430,458 + 0.8
430,471 - -0.0
430,472 - -1.3
430,477 - 0.1
430,478 + -0.3
430,483 + 0.5
430,484 + -0.2
430,484 + 0.8
430,485 + 0.0
430,485 + 1.4
430,486 + 1.4
430,494 - 0.4
430,494 - -0.4
430,497 + 0.9
430,497 + -1.0
430,497 + -0.9
430,500 + 0.3
430,502 + 0.4
430,526 - 1.1
430,534 - -0.8
430,542 - -0.9
430,542 - -1.5
430,543 - -0.1
430,545 - 0.3
430,545 - 0.4
430,546 + 0.1
430,546 + 0.6
430,546 - -0.0
430,553 - 0.5
430,553 - -0.6
430,553 - -0.1
430,555 - 2.0
430,555 - 3.0
430,557 - 2.3
430,557 - 0.1
430,558 + -2.2
430,558 + 1.4
430,561 + 2.3
430,562 + 0.5
430,567 - 0.0
430,569 - 0.2
430,569 + 0.3
430,569 - -1.8
430,573 - -0.5
430,573 - 0.0
430,573 - -0.3
430,575 - 2.8
430,576 + -0.9
430,577 - -0.3
430,577 + 0.7
430,578 + 1.6
430,579 + 0.1
430,584 - 0.8
430,585 - 0.3
430,587 + 0.3
430,588 + -0.2
430,588 - 0.3
430,593 - 0.2
430,594 + 0.9
430,596 - 0.3
430,596 + -1.6
430,597 + 1.6
430,601 - 1.0
430,605 + -1.4
430,605 - 1.0
430,606 + -0.5
430,606 - -0.5
430,609 - -0.1
430,615 + 0.3
430,620 + -0.4
430,622 + 0.7
430,629 - -1.3
430,638 - 0.5
430,640 - -1.6
430,644 + 0.3
430,644 - 0.2
430,645 - 1.6
430,645 + -0.1
430,646 + 0.8
430,657 - 0.6
430,658 + 1.1
430,670 - 0.2
430,685 - -1.2
430,705 + -0.5
430,707 + 1.4
430,714 - 0.3
430,717 + 1.4
430,723 - 0.2
430,729 + 0.3
430,733 - 0.2
430,741 - 0.8
430,743 - -0.5
430,745 - 0.1
430,745 - 0.2
430,745 - -1.4
430,748 - -2.0
430,748 - 0.1
430,748 - 1.1
430,752 - 1.9
430,752 - 1.5
430,769 + -0.6
430,774 + -0.0
430,794 - -0.0
430,806 - 0.3
430,813 + 1.5
430,821 + 3.0
430,826 + 0.9
430,828 + 0.1
430,830 - 1.9
430,832 - 1.5
430,835 + -1.3
430,835 + -0.7
430,836 - -0.6
430,837 + 2.0
430,838 + -1.0
430,845 - 1.4
430,846 - 1.3
430,847 + 1.2
430,849 - 0.1
430,850 + -0.1
430,852 - -0.9
430,852 - 0.6
430,853 - 0.3
430,853 - 1.3
430,857 + 1.9
430,868 - 1.2
430,871 - 1.3
430,872 - 0.6
430,872 + 1.8
430,874 - -0.0
430,874 - 1.1
430,876 + 1.2
430,876 - -0.7
430,877 + 1.0
430,877 + 2.8
430,877 - 0.7
430,881 - -0.4
430,882 + -1.6
430,884 + 2.0
430,887 + 0.4
430,894 - 0.6
430,908 - -0.1
430,909 - 1.1
430,911 - 1.1
430,921 - 1.0
430,923 - 1.5
430,924 + 0.9
430,924 + 2.4
430,928 - -0.5
430,930 - -1.1
430,937 + 1.9
430,938 + -0.2
430,940 + -0.4
430,940 + -2.4
430,941 + 0.8
430,951 + 0.5
430,956 + -0.1
430,962 - -0.1
430,964 - 0.1
430,964 + 2.8
430,964 - -0.7
430,968 - -0.1
430,970 + 1.3
430,974 + 0.3
430,976 + -0.3
430,977 + -0.1
430,978 - -0.4
430,978 - -0.1
430,978 - 1.1
430,979 + -0.5
430,979 + 1.0
430,999 + 0.5
431,003 - 0.5
431,003 - -0.9
431,008 - 0.0
431,010 - -0.2
431,012 - -2.9
431,012 - 1.1
431,016 - 0.5
431,016 - 0.8
431,023 + 0.1
431,024 - -1.5
431,027 - -1.2
431,028 + -0.3
431,029 - -0.3
431,031 - 0.6
431,031 - 0.6
431,032 + 0.6
431,033 - 2.0
431,040 - 0.5
431,041 + -0.3
431,049 + 1.4
431,052 - -0.6
431,052 - 1.3
431,063 - 2.8
431,065 - 0.5
431,066 + 1.2
431,066 + -0.1
431,084 - -0.8
431,087 - 0.4
431,089 + -0.5
431,101 - 0.0
431,110 - 0.6
431,110 + 1.9
431,114 + 0.8