Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3146

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514 mRNA_3147: 11515 - Hypothetical Protein, at 427660 to 428214 11515

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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422,923 - 11513 mRNA_3145 0.43 0.2
423,146 + 11513 mRNA_3145 0.61 0.3
423,160 - 11513 mRNA_3145 0.62 -0.3
423,386 + 11513 mRNA_3145 0.79 -0.2
423,418 - 11513 mRNA_3145 0.82 0.7
423,449 - 11513 mRNA_3145 0.84 2.4
423,553 - 1.1
423,553 + -0.4
423,587 - 0.1
423,640 - 2.1
423,685 + 0.1
423,708 + 1.4
423,963 - -0.3
424,268 - 11514 mRNA_3146 0.13 0.3
424,452 + 11514 mRNA_3146 0.19 0.3
424,455 - 11514 mRNA_3146 0.19 0.6
424,517 + 11514 mRNA_3146 0.21 -0.0
424,562 - 11514 mRNA_3146 0.22 3.3
424,713 + 11514 mRNA_3146 0.26 1.4
424,714 + 11514 mRNA_3146 0.26 0.7
424,805 + 11514 mRNA_3146 0.29 1.7
424,844 + 11514 mRNA_3146 0.30 0.7
424,847 - 11514 mRNA_3146 0.30 -0.3
425,001 - 11514 mRNA_3146 0.34 0.9
425,158 - 11514 mRNA_3146 0.39 2.1
425,188 - 11514 mRNA_3146 0.40 0.9
425,191 - 11514 mRNA_3146 0.40 0.8
425,196 - 11514 mRNA_3146 0.40 1.1
425,203 + 11514 mRNA_3146 0.40 1.4
425,203 + 11514 mRNA_3146 0.40 2.2
425,203 + 11514 mRNA_3146 0.40 0.3
425,282 - 11514 mRNA_3146 0.42 -2.9
425,286 - 11514 mRNA_3146 0.42 2.3
425,573 + 11514 mRNA_3146 0.51 0.4
425,575 - 11514 mRNA_3146 0.51 0.4
425,898 - 11514 mRNA_3146 0.60 -1.3
426,037 + 11514 mRNA_3146 0.64 -1.4
426,058 - 11514 mRNA_3146 0.64 0.9
426,323 - 11514 mRNA_3146 0.72 -0.2
426,639 - 11514 mRNA_3146 0.81 0.8
426,921 - 11514 mRNA_3146 0.89 -0.5
426,952 + 11514 mRNA_3146 0.90 1.0
427,071 + 0.1
427,081 - -1.6
427,083 + 2.7
427,205 - 0.5
427,205 - -1.4
427,210 - -0.3
427,214 + -0.9
427,226 + 0.8
427,228 - -0.1
427,237 + 2.0
427,238 + -0.3
427,390 - -1.7
427,392 - 0.3
427,399 + -0.9
427,404 + -0.9
427,406 - 0.0
427,412 - -0.1
427,413 + 1.2
427,422 - 0.9
427,424 + 0.3
427,520 - -1.0
427,525 - 1.2
427,537 + 1.6
427,669 + 2.8
427,682 + 0.1
427,713 - -0.3
427,793 + 11515 mRNA_3147 0.24 0.9
427,812 - 11515 mRNA_3147 0.27 -0.8
428,009 - 11515 mRNA_3147 0.63 0.6
428,074 - 11515 mRNA_3147 0.75 1.7
428,288 + 0.8