Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3145

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513 mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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421,438 - 1.5
421,469 - 0.8
421,470 - 2.4
421,476 + 2.8
421,478 - 1.6
421,480 + 0.6
421,494 - 0.0
421,526 - -0.4
421,594 + -0.1
421,596 - 0.9
421,603 - -0.5
421,614 + 0.7
421,617 - 2.0
421,618 + -0.0
421,622 - 0.5
421,622 - 0.1
421,624 - 1.1
421,634 - 0.3
421,652 + 1.9
421,656 + -1.3
421,658 + 1.1
421,660 + -0.4
421,667 + -0.8
421,676 + -0.9
421,717 - 0.1
421,730 + -2.1
421,730 - 1.0
421,732 - 1.0
421,735 + 0.1
421,737 - 0.8
421,738 + 0.4
421,739 + -0.2
421,741 - -1.8
421,747 - -0.9
421,753 - -1.4
421,758 + -1.2
421,759 + 1.1
421,759 + -0.7
421,760 + 0.9
421,760 + -0.1
421,760 + 0.3
421,762 - -0.8
421,763 - 0.9
421,764 - 0.9
421,765 + -0.3
421,766 + -0.2
421,768 + 1.0
421,776 + 0.2
421,779 + 2.1
421,781 + 1.3
421,784 + -0.9
421,793 + 0.7
421,796 - 0.7
421,798 - 2.2
421,798 - -0.1
421,806 - -1.5
421,806 - 0.0
421,811 + 2.0
421,815 + 1.5
421,825 + 0.6
421,833 - 0.2
421,940 + 0.8
421,942 - 1.6
421,956 - 0.2
421,956 - -0.3
421,959 - -1.5
421,963 + 1.2
421,969 - 0.9
421,972 - 1.6
421,981 - 0.5
421,984 - -0.1
421,985 - 0.8
421,997 - -0.3
421,998 + 1.3
421,999 + -0.5
422,002 + -2.9
422,018 - -0.3
422,020 + 1.0
422,020 - 1.7
422,031 + 0.2
422,031 + -0.0
422,040 - 0.5
422,042 + 0.3
422,043 - 1.7
422,044 - 1.2
422,048 + 1.1
422,050 + -0.1
422,051 + 0.7
422,052 + 1.9
422,066 - -0.1
422,072 + 0.6
422,072 - 1.8
422,074 - -3.0
422,075 - 0.5
422,085 + 1.7
422,113 - -2.3
422,132 + 0.1
422,145 + -0.4
422,163 + -1.1
422,165 - -0.3
422,174 + 0.3
422,174 + -1.9
422,188 - -0.2
422,195 - -1.5
422,205 + 0.9
422,207 + -1.5
422,212 - 2.5
422,214 + 0.2
422,221 - 2.0
422,223 - 1.5
422,237 - 1.2
422,255 - 0.2
422,271 + -1.6
422,276 + 0.4
422,280 + 0.6
422,314 - 1.3
422,351 - -1.8
422,364 - -1.5
422,382 + 3.6
422,513 + 11513 mRNA_3145 0.11 0.5
422,517 + 11513 mRNA_3145 0.12 0.1
422,525 + 11513 mRNA_3145 0.12 1.7
422,527 - 11513 mRNA_3145 0.13 -0.4
422,529 + 11513 mRNA_3145 0.13 -0.4
422,538 + 11513 mRNA_3145 0.13 2.0
422,616 - 11513 mRNA_3145 0.19 1.0
422,642 + 11513 mRNA_3145 0.21 -1.1
422,660 + 11513 mRNA_3145 0.23 1.0
422,660 - 11513 mRNA_3145 0.23 0.8
422,662 + 11513 mRNA_3145 0.23 0.2
422,689 - 11513 mRNA_3145 0.25 -1.1
422,713 + 11513 mRNA_3145 0.27 0.7
422,778 - 11513 mRNA_3145 0.32 0.9
422,923 - 11513 mRNA_3145 0.43 0.2
423,146 + 11513 mRNA_3145 0.61 0.3
423,160 - 11513 mRNA_3145 0.62 -0.3
423,386 + 11513 mRNA_3145 0.79 -0.2
423,418 - 11513 mRNA_3145 0.82 0.7
423,449 - 11513 mRNA_3145 0.84 2.4
423,553 - 1.1
423,553 + -0.4
423,587 - 0.1
423,640 - 2.1
423,685 + 0.1
423,708 + 1.4
423,963 - -0.3
424,268 - 11514 mRNA_3146 0.13 0.3
424,452 + 11514 mRNA_3146 0.19 0.3
424,455 - 11514 mRNA_3146 0.19 0.6
424,517 + 11514 mRNA_3146 0.21 -0.0
424,562 - 11514 mRNA_3146 0.22 3.3