Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3143

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3142: 11510 - K14663 NTA1 protein N-terminal amidase, at 414641 to 415857 11510 mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415939 to 417358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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415,016 - 11510 mRNA_3142 0.31 1.4
415,147 - 11510 mRNA_3142 0.42 0.3
415,170 + 11510 mRNA_3142 0.43 -1.1
415,188 - 11510 mRNA_3142 0.45 -1.7
415,281 - 11510 mRNA_3142 0.53 -0.8
415,295 - 11510 mRNA_3142 0.54 -0.8
415,456 - 11510 mRNA_3142 0.67 0.1
415,535 - 11510 mRNA_3142 0.73 1.0
415,629 - 11510 mRNA_3142 0.81 -0.4
415,642 + 11510 mRNA_3142 0.82 -0.7
415,643 + 11510 mRNA_3142 0.82 1.3
415,657 + 11510 mRNA_3142 0.83 -0.5
415,701 - 11510 mRNA_3142 0.87 0.3
415,794 - -1.8
415,796 - 1.0
415,830 - -0.6
415,861 + -0.5
415,909 + 0.9
415,935 - 0.3
416,077 + 0.3
416,364 + 11511 mRNA_3143 0.30 0.4
416,495 - 11511 mRNA_3143 0.39 1.5
416,634 - 11511 mRNA_3143 0.49 0.6
416,758 - 11511 mRNA_3143 0.58 -0.9
416,791 + 11511 mRNA_3143 0.60 -0.5
416,807 + 11511 mRNA_3143 0.61 1.0
416,884 - 11511 mRNA_3143 0.67 1.2
416,914 - 11511 mRNA_3143 0.69 0.0
416,955 + 11511 mRNA_3143 0.72 -0.1
417,060 - 11511 mRNA_3143 0.79 -1.5
417,093 + 11511 mRNA_3143 0.81 1.0
417,095 + 11511 mRNA_3143 0.81 0.4
417,197 - 11511 mRNA_3143 0.89 1.9
417,214 + 11511 mRNA_3143 0.90 -0.4
417,228 - 0.3
417,239 + -1.3
417,250 - 1.9
417,378 - 0.2
417,383 - 2.4
417,385 + 0.3
417,392 - 1.4
417,392 + 2.0
417,395 - 1.0
417,396 - 0.8
417,396 - 3.4
417,398 - -0.2
417,402 - -0.1
417,405 + -1.6
417,423 + -0.0
417,427 + 1.2
417,431 - 1.0
417,436 - 0.1
417,446 - 0.4
417,449 - -1.6
417,454 + -0.7
417,462 + 2.4
417,463 + 1.1
417,478 + -1.8
417,495 - -0.3
417,557 + -0.7
417,576 + 0.9
417,607 - 0.1
417,609 + -0.0
417,616 - 0.0
417,776 - 0.3
417,777 + 0.2
417,955 + 11512 mRNA_3144 0.11 0.7
418,097 - 11512 mRNA_3144 0.15 -1.5