Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3139

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411347 to 412227 11508

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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409,418 + 11506 mRNA_3138 0.49 -0.5
409,533 - 11506 mRNA_3138 0.59 0.5
409,674 - 11506 mRNA_3138 0.70 0.6
409,714 - 11506 mRNA_3138 0.74 1.6
409,887 + 11506 mRNA_3138 0.88 0.8
409,919 + 1.0
409,981 + 1.4
409,982 - -0.0
410,015 - 0.6
410,053 - -0.5
410,116 + 0.0
410,149 + 0.4
410,325 + 0.1
410,342 + 11507 mRNA_3139 0.13 -0.2
410,423 - 11507 mRNA_3139 0.27 -0.5
410,460 + 11507 mRNA_3139 0.33 1.3
410,477 - 11507 mRNA_3139 0.36 0.5
410,560 + 11507 mRNA_3139 0.51 2.9
410,576 + 11507 mRNA_3139 0.54 4.6
410,576 + 11507 mRNA_3139 0.54 0.8
410,587 + 11507 mRNA_3139 0.56 2.0
410,593 + 11507 mRNA_3139 0.57 0.3
410,644 - 11507 mRNA_3139 0.66 1.6
410,720 + 11507 mRNA_3139 0.79 0.0
410,758 - 11507 mRNA_3139 0.86 0.0
410,795 + 0.3
410,798 - 1.1
410,855 + -0.8
410,860 - 1.6
410,866 - 0.8
410,927 + 2.1
410,955 - -1.0
410,963 - 0.2
410,978 - 0.5
410,998 + -0.0
411,007 + 1.2
411,012 - 1.3
411,019 + 0.7
411,021 + 1.8
411,021 + 0.6
411,032 - 0.2
411,045 - 0.4
411,076 + 0.6
411,102 + 1.0
411,118 - -0.3
411,122 - 0.2
411,130 - 0.2
411,141 + -0.5
411,147 + 1.3
411,147 + 0.1
411,155 - -1.7
411,156 - 0.4
411,157 + -0.8
411,163 - 0.5
411,165 - 0.8
411,166 + 0.7
411,168 - -0.7
411,175 + -0.9
411,178 - 1.6
411,180 - 1.6
411,183 + 1.3
411,192 + 1.3
411,193 - -0.2
411,194 - -2.6
411,211 - 0.4
411,218 - -0.3
411,218 - -0.3
411,220 + 1.4
411,231 + 1.6
411,232 - 1.5
411,236 + 0.1
411,237 + -0.3
411,238 + -1.4
411,261 + 1.5
411,262 + -0.9
411,274 + 3.6
411,275 + 1.4
411,276 + -0.7
411,293 - 0.4
411,293 + -0.6
411,295 + -0.1
411,301 - -0.2
411,303 + 0.9
411,310 + -0.0
411,317 - 0.6
411,333 + 0.4
411,381 - -1.0
411,394 + -0.6
411,422 - 3.2
411,435 - 11508 mRNA_3140 0.10 1.6
411,435 - 11508 mRNA_3140 0.10 0.5
411,436 + 11508 mRNA_3140 0.10 -0.8
411,437 + 11508 mRNA_3140 0.10 0.1
411,449 - 11508 mRNA_3140 0.12 0.3
411,454 + 11508 mRNA_3140 0.12 0.6
411,588 - 11508 mRNA_3140 0.27 -0.2
411,595 - 11508 mRNA_3140 0.28 1.1
411,745 + 11508 mRNA_3140 0.45 1.1
411,770 - 11508 mRNA_3140 0.48 -1.2
411,815 + 11508 mRNA_3140 0.53 -2.2