Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3138

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3137: 11505 - SUPERFAMILY--SSF48208, at 407732 to 408630 11505 mRNA_3138: 11506 - K13106 BUD13, CWC26 pre-mRNA-splicing factor CWC26, at 408830 to 410030 11506 mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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407,871 + 11505 mRNA_3137 0.15 1.5
407,875 - 11505 mRNA_3137 0.16 1.4
407,932 + 11505 mRNA_3137 0.22 1.0
408,220 - 11505 mRNA_3137 0.54 0.8
408,266 + 11505 mRNA_3137 0.59 -1.1
408,267 - 11505 mRNA_3137 0.60 0.6
408,311 - 11505 mRNA_3137 0.64 0.0
408,357 - 11505 mRNA_3137 0.70 -1.4
408,510 - 11505 mRNA_3137 0.87 3.6
408,556 + 0.0
408,566 + 2.9
408,638 - -0.5
408,652 - 2.3
408,665 + 1.9
408,669 - -0.3
408,669 - -0.6
408,673 - 0.6
408,676 - -1.0
408,681 - 0.5
408,782 + 1.2
408,813 - -0.0
408,948 + -0.6
408,962 - 11506 mRNA_3138 0.11 0.9
408,971 + 11506 mRNA_3138 0.12 -0.2
408,971 - 11506 mRNA_3138 0.12 1.1
408,976 - 11506 mRNA_3138 0.12 1.9
409,061 - 11506 mRNA_3138 0.19 -0.4
409,081 - 11506 mRNA_3138 0.21 -0.1
409,105 - 11506 mRNA_3138 0.23 -1.2
409,107 + 11506 mRNA_3138 0.23 -0.6
409,109 - 11506 mRNA_3138 0.23 -1.1
409,134 + 11506 mRNA_3138 0.25 -0.7
409,418 + 11506 mRNA_3138 0.49 -0.5
409,533 - 11506 mRNA_3138 0.59 0.5
409,674 - 11506 mRNA_3138 0.70 0.6
409,714 - 11506 mRNA_3138 0.74 1.6
409,887 + 11506 mRNA_3138 0.88 0.8
409,919 + 1.0
409,981 + 1.4
409,982 - -0.0
410,015 - 0.6
410,053 - -0.5
410,116 + 0.0
410,149 + 0.4
410,325 + 0.1
410,342 + 11507 mRNA_3139 0.13 -0.2
410,423 - 11507 mRNA_3139 0.27 -0.5
410,460 + 11507 mRNA_3139 0.33 1.3
410,477 - 11507 mRNA_3139 0.36 0.5
410,560 + 11507 mRNA_3139 0.51 2.9
410,576 + 11507 mRNA_3139 0.54 4.6
410,576 + 11507 mRNA_3139 0.54 0.8
410,587 + 11507 mRNA_3139 0.56 2.0
410,593 + 11507 mRNA_3139 0.57 0.3
410,644 - 11507 mRNA_3139 0.66 1.6
410,720 + 11507 mRNA_3139 0.79 0.0
410,758 - 11507 mRNA_3139 0.86 0.0
410,795 + 0.3
410,798 - 1.1
410,855 + -0.8
410,860 - 1.6
410,866 - 0.8
410,927 + 2.1
410,955 - -1.0
410,963 - 0.2
410,978 - 0.5
410,998 + -0.0
411,007 + 1.2
411,012 - 1.3
411,019 + 0.7
411,021 + 1.8
411,021 + 0.6