Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3131

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387441 to 391334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391641 to 394728 11499 mRNA_3132: 11500 - Hypothetical Protein, at 394889 to 395179 11500 mRNA_3133: 11501 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 395348 to 397742 11501

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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390,703 - 11498 mRNA_3130 0.84 1.3
390,706 + 11498 mRNA_3130 0.84 0.6
390,719 + 11498 mRNA_3130 0.84 2.1
390,721 + 11498 mRNA_3130 0.84 1.9
390,854 - 11498 mRNA_3130 0.88 1.1
390,896 - 11498 mRNA_3130 0.89 1.6
391,116 - -0.2
391,132 + 1.4
391,152 - -0.4
391,305 + -0.0
391,309 + 1.1
391,424 - 0.6
391,585 + 0.9
391,588 + 0.4
391,622 - 2.4
392,104 - 11499 mRNA_3131 0.15 -1.0
392,295 - 11499 mRNA_3131 0.21 1.0
392,303 + 11499 mRNA_3131 0.21 0.6
392,319 - 11499 mRNA_3131 0.22 -2.5
392,331 - 11499 mRNA_3131 0.22 1.6
392,350 - 11499 mRNA_3131 0.23 1.4
392,446 + 11499 mRNA_3131 0.26 1.2
392,465 + 11499 mRNA_3131 0.27 -2.5
392,484 - 11499 mRNA_3131 0.27 -0.3
392,598 - 11499 mRNA_3131 0.31 -0.5
392,618 - 11499 mRNA_3131 0.32 0.1
392,876 - 11499 mRNA_3131 0.40 0.2
392,886 - 11499 mRNA_3131 0.40 1.3
392,902 + 11499 mRNA_3131 0.41 0.7
393,058 + 11499 mRNA_3131 0.46 0.2
393,180 + 11499 mRNA_3131 0.50 0.4
393,200 + 11499 mRNA_3131 0.50 0.1
393,330 - 11499 mRNA_3131 0.55 1.6
393,357 + 11499 mRNA_3131 0.56 -1.7
393,481 + 11499 mRNA_3131 0.60 0.1
393,484 - 11499 mRNA_3131 0.60 -0.1
393,642 + 11499 mRNA_3131 0.65 0.5
393,649 + 11499 mRNA_3131 0.65 1.0
393,650 + 11499 mRNA_3131 0.65 0.7
393,920 + 11499 mRNA_3131 0.74 1.7
394,198 - 11499 mRNA_3131 0.83 2.1
394,321 - 11499 mRNA_3131 0.87 0.7
394,367 + 11499 mRNA_3131 0.88 0.1
394,489 - -1.5
394,497 - 0.0
394,510 + -0.2
394,517 - 0.3
394,644 - 0.5
394,801 + -0.7
394,805 - -1.7
394,810 - 1.8
394,824 + 0.3
394,869 - -1.6
394,938 + 11500 mRNA_3132 0.17 -0.1
394,993 - 11500 mRNA_3132 0.36 1.5
395,031 - 11500 mRNA_3132 0.49 2.5
395,225 - 0.6
395,255 + -0.6
395,379 - 0.9
395,508 + 1.0
395,515 - -0.1
395,643 + 11501 mRNA_3133 0.12 0.7
395,683 + 11501 mRNA_3133 0.14 2.4
395,705 + 11501 mRNA_3133 0.15 2.2