Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3128

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496 mRNA_3129: 11497 - KOG4090 Uncharacterized conserved protein, at 385430 to 386354 11497

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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383,425 + 11495 mRNA_3127 0.72 0.1
383,455 + 11495 mRNA_3127 0.73 -0.8
383,585 - 11495 mRNA_3127 0.77 -0.4
383,599 - 11495 mRNA_3127 0.78 -0.1
383,613 + 11495 mRNA_3127 0.78 1.1
383,762 - 11495 mRNA_3127 0.83 2.5
384,060 + -0.3
384,122 - 1.7
384,271 + 0.8
384,348 + 0.6
384,349 - 1.1
384,352 + -0.8
384,442 + 11496 mRNA_3128 0.12 1.0
384,476 - 11496 mRNA_3128 0.15 0.6
384,485 - 11496 mRNA_3128 0.17 1.9
384,508 - 11496 mRNA_3128 0.19 0.5
384,531 + 11496 mRNA_3128 0.22 0.4
384,599 + 11496 mRNA_3128 0.30 0.5
384,619 + 11496 mRNA_3128 0.32 -0.5
384,650 + 11496 mRNA_3128 0.36 -0.5
384,741 + 11496 mRNA_3128 0.46 -0.1
384,741 + 11496 mRNA_3128 0.46 -1.0
384,741 + 11496 mRNA_3128 0.46 1.5
384,741 + 11496 mRNA_3128 0.46 -2.0
384,744 + 11496 mRNA_3128 0.47 0.6
384,922 - 11496 mRNA_3128 0.67 2.4
384,929 + 11496 mRNA_3128 0.68 0.2
384,948 + 11496 mRNA_3128 0.70 1.9
384,948 + 11496 mRNA_3128 0.70 1.4
385,095 + 11496 mRNA_3128 0.87 2.4
385,095 + 11496 mRNA_3128 0.87 1.1
385,237 + 1.2
385,246 - 0.4
385,249 + 1.6
385,256 + 0.7
385,258 - -0.8
385,365 - 2.9
385,376 + -0.3
385,386 - -1.8
385,532 - 11497 mRNA_3129 0.11 0.3
385,689 - 11497 mRNA_3129 0.28 0.3
385,696 - 11497 mRNA_3129 0.29 -1.7
385,825 - 11497 mRNA_3129 0.43 0.1
385,838 + 11497 mRNA_3129 0.44 0.2
385,958 + 11497 mRNA_3129 0.57 0.6
385,987 - 11497 mRNA_3129 0.60 2.2
386,110 - 11497 mRNA_3129 0.74 0.7
386,116 - 11497 mRNA_3129 0.74 1.2
386,127 - 11497 mRNA_3129 0.75 0.3
386,136 - 11497 mRNA_3129 0.76 -0.6
386,139 - 11497 mRNA_3129 0.77 0.4