Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3127

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3126: 11494 - KOG0019 Molecular chaperone (HSP90 family), at 380662 to 381306 11494 mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495 mRNA_3128: 11496 - BLAST protein transporter [Pseudozyma hubeiensis SY62], at 384343 to 385202 11496

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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380,571 + 2.2
380,603 + 2.0
380,720 - 1.3
380,740 + 11494 mRNA_3126 0.12 1.0
380,851 - 11494 mRNA_3126 0.29 -0.5
380,854 - 11494 mRNA_3126 0.30 -0.1
380,854 + 11494 mRNA_3126 0.30 -0.1
380,868 + 11494 mRNA_3126 0.32 1.7
380,875 + 11494 mRNA_3126 0.33 1.6
380,877 + 11494 mRNA_3126 0.33 1.9
380,882 + 11494 mRNA_3126 0.34 2.5
380,888 + 11494 mRNA_3126 0.35 1.7
380,888 + 11494 mRNA_3126 0.35 0.4
380,935 - 11494 mRNA_3126 0.42 -1.8
380,940 + 11494 mRNA_3126 0.43 0.1
381,015 + 11494 mRNA_3126 0.55 0.8
381,024 - 11494 mRNA_3126 0.56 -0.6
381,027 - 11494 mRNA_3126 0.57 1.8
381,161 - 11494 mRNA_3126 0.77 1.1
381,171 - 11494 mRNA_3126 0.79 0.4
381,173 + 11494 mRNA_3126 0.79 0.3
381,293 + -1.5
381,458 - 1.2
381,581 + -0.0
381,614 + -0.6
381,833 + 11495 mRNA_3127 0.17 0.3
381,886 + 11495 mRNA_3127 0.19 0.6
381,995 + 11495 mRNA_3127 0.23 2.7
382,017 + 11495 mRNA_3127 0.23 1.5
382,179 + 11495 mRNA_3127 0.29 -0.0
382,184 + 11495 mRNA_3127 0.29 -0.3
382,428 + 11495 mRNA_3127 0.37 0.2
382,559 + 11495 mRNA_3127 0.42 -0.1
382,588 + 11495 mRNA_3127 0.43 2.1
382,600 + 11495 mRNA_3127 0.43 -0.2
382,710 - 11495 mRNA_3127 0.47 0.2
382,852 - 11495 mRNA_3127 0.52 1.9
383,243 - 11495 mRNA_3127 0.65 0.2
383,261 + 11495 mRNA_3127 0.66 0.5
383,315 - 11495 mRNA_3127 0.68 0.1
383,323 + 11495 mRNA_3127 0.68 1.2
383,425 + 11495 mRNA_3127 0.72 0.1
383,455 + 11495 mRNA_3127 0.73 -0.8
383,585 - 11495 mRNA_3127 0.77 -0.4
383,599 - 11495 mRNA_3127 0.78 -0.1
383,613 + 11495 mRNA_3127 0.78 1.1
383,762 - 11495 mRNA_3127 0.83 2.5
384,060 + -0.3
384,122 - 1.7
384,271 + 0.8
384,348 + 0.6
384,349 - 1.1
384,352 + -0.8
384,442 + 11496 mRNA_3128 0.12 1.0
384,476 - 11496 mRNA_3128 0.15 0.6
384,485 - 11496 mRNA_3128 0.17 1.9
384,508 - 11496 mRNA_3128 0.19 0.5
384,531 + 11496 mRNA_3128 0.22 0.4
384,599 + 11496 mRNA_3128 0.30 0.5
384,619 + 11496 mRNA_3128 0.32 -0.5
384,650 + 11496 mRNA_3128 0.36 -0.5
384,741 + 11496 mRNA_3128 0.46 -0.1
384,741 + 11496 mRNA_3128 0.46 -1.0
384,741 + 11496 mRNA_3128 0.46 1.5
384,741 + 11496 mRNA_3128 0.46 -2.0
384,744 + 11496 mRNA_3128 0.47 0.6
384,922 - 11496 mRNA_3128 0.67 2.4
384,929 + 11496 mRNA_3128 0.68 0.2
384,948 + 11496 mRNA_3128 0.70 1.9
384,948 + 11496 mRNA_3128 0.70 1.4
385,095 + 11496 mRNA_3128 0.87 2.4
385,095 + 11496 mRNA_3128 0.87 1.1
385,237 + 1.2
385,246 - 0.4
385,249 + 1.6