Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3126

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3126: 11494 - KOG0019 Molecular chaperone (HSP90 family), at 380662 to 381306 11494 mRNA_3127: 11495 - K11984 SART1, HAF, SNU66 U4/U6.U5 tri-snRNP-associated protein 1, at 381334 to 384253 11495

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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379,810 - 0.8
379,834 - -1.8
379,988 + 1.1
379,989 + -0.1
379,991 - -2.1
380,093 - -0.5
380,093 + -1.7
380,113 + 0.4
380,132 + -0.1
380,147 - -1.1
380,294 - 0.0
380,571 + 2.2
380,603 + 2.0
380,720 - 1.3
380,740 + 11494 mRNA_3126 0.12 1.0
380,851 - 11494 mRNA_3126 0.29 -0.5
380,854 - 11494 mRNA_3126 0.30 -0.1
380,854 + 11494 mRNA_3126 0.30 -0.1
380,868 + 11494 mRNA_3126 0.32 1.7
380,875 + 11494 mRNA_3126 0.33 1.6
380,877 + 11494 mRNA_3126 0.33 1.9
380,882 + 11494 mRNA_3126 0.34 2.5
380,888 + 11494 mRNA_3126 0.35 1.7
380,888 + 11494 mRNA_3126 0.35 0.4
380,935 - 11494 mRNA_3126 0.42 -1.8
380,940 + 11494 mRNA_3126 0.43 0.1
381,015 + 11494 mRNA_3126 0.55 0.8
381,024 - 11494 mRNA_3126 0.56 -0.6
381,027 - 11494 mRNA_3126 0.57 1.8
381,161 - 11494 mRNA_3126 0.77 1.1
381,171 - 11494 mRNA_3126 0.79 0.4
381,173 + 11494 mRNA_3126 0.79 0.3
381,293 + -1.5
381,458 - 1.2
381,581 + -0.0
381,614 + -0.6
381,833 + 11495 mRNA_3127 0.17 0.3
381,886 + 11495 mRNA_3127 0.19 0.6
381,995 + 11495 mRNA_3127 0.23 2.7
382,017 + 11495 mRNA_3127 0.23 1.5
382,179 + 11495 mRNA_3127 0.29 -0.0
382,184 + 11495 mRNA_3127 0.29 -0.3