Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3123

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370199 to 371731 11490 mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371854 to 373401 11491 mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373558 to 376751 11492

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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370,895 + 11490 mRNA_3122 0.45 -0.4
370,924 - 11490 mRNA_3122 0.47 -0.4
371,004 - 11490 mRNA_3122 0.53 0.8
371,042 + 11490 mRNA_3122 0.55 3.2
371,044 + 11490 mRNA_3122 0.55 2.3
371,170 - 11490 mRNA_3122 0.63 1.8
371,203 - 11490 mRNA_3122 0.65 0.8
371,315 - 11490 mRNA_3122 0.73 0.1
371,518 - 11490 mRNA_3122 0.86 0.5
371,629 - -0.6
371,640 + 0.8
371,640 + -0.3
371,774 + 3.1
371,774 - -1.1
371,775 - 1.9
371,776 - 1.1
371,785 + 0.6
371,786 - -2.3
371,795 + 0.1
371,803 + -0.7
371,804 + 0.1
371,806 + 1.4
371,814 - 0.3
371,817 + -0.1
371,917 + 0.3
371,931 + 1.6
371,934 + 0.5
371,947 + 0.2
371,953 - 1.8
371,954 - 0.2
371,957 + 0.1
372,078 - 11491 mRNA_3123 0.14 1.0
372,079 - 11491 mRNA_3123 0.15 -1.2
372,080 + 11491 mRNA_3123 0.15 1.2
372,081 - 11491 mRNA_3123 0.15 2.1
372,089 - 11491 mRNA_3123 0.15 1.9
372,105 - 11491 mRNA_3123 0.16 -0.9
372,116 + 11491 mRNA_3123 0.17 0.4
372,222 + 11491 mRNA_3123 0.24 -0.5
372,244 + 11491 mRNA_3123 0.25 0.2
372,247 + 11491 mRNA_3123 0.25 -0.8
372,513 - 11491 mRNA_3123 0.43 0.1
372,516 + 11491 mRNA_3123 0.43 0.1
372,522 + 11491 mRNA_3123 0.43 0.2
372,538 + 11491 mRNA_3123 0.44 0.9
372,782 - 11491 mRNA_3123 0.60 -2.4
372,782 + 11491 mRNA_3123 0.60 -0.0
372,818 - 11491 mRNA_3123 0.62 -0.0
372,832 - 11491 mRNA_3123 0.63 0.8
372,940 - 11491 mRNA_3123 0.70 -0.2
372,960 - 11491 mRNA_3123 0.71 -0.2
372,971 - 11491 mRNA_3123 0.72 -0.2
372,976 - 11491 mRNA_3123 0.72 -0.0
373,090 + 11491 mRNA_3123 0.80 1.4
373,098 + 11491 mRNA_3123 0.80 -0.7
373,114 - 11491 mRNA_3123 0.81 1.2
373,245 - 11491 mRNA_3123 0.90 -1.4
373,336 + -0.5
373,391 + -0.1
373,393 + 0.6
373,547 - 0.3
373,652 - -0.7
373,654 - -0.8
373,663 + 0.1
373,667 - 0.4
373,669 - 0.0
373,670 - -0.3
373,676 + 0.4
373,684 - 0.0
373,684 - 0.2
373,684 - -0.3
373,688 - -0.2
373,691 + -1.1
373,692 - -0.2
373,700 - -0.6
373,702 + 0.3
373,702 + 0.0
373,704 + 1.4
373,706 + 2.1
373,712 + 0.4
373,718 - 0.5
373,719 + -2.0
373,720 - -0.2
373,805 - 2.8
373,830 - 0.4
373,832 - 0.3
373,833 + -1.6
373,841 + 2.2
373,842 - 2.3
373,845 - 2.1
373,847 + 2.1
373,862 + 0.9
373,872 - 0.6
373,991 - 11492 mRNA_3124 0.14 1.7
373,994 + 11492 mRNA_3124 0.14 -0.5
374,008 - 11492 mRNA_3124 0.14 1.0
374,012 + 11492 mRNA_3124 0.14 -0.1
374,018 + 11492 mRNA_3124 0.14 -1.0
374,025 - 11492 mRNA_3124 0.15 2.3
374,032 - 11492 mRNA_3124 0.15 -0.2
374,176 - 11492 mRNA_3124 0.19 1.3
374,176 - 11492 mRNA_3124 0.19 -0.6
374,286 + 11492 mRNA_3124 0.23 -1.5
374,331 - 11492 mRNA_3124 0.24 0.1
374,341 + 11492 mRNA_3124 0.25 0.3