Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3121

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369378 to 369678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370199 to 371731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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368,502 + 11488 mRNA_3120 0.55 -0.3
368,540 + 11488 mRNA_3120 0.57 -1.0
368,552 + 11488 mRNA_3120 0.58 1.3
368,665 - 11488 mRNA_3120 0.64 0.6
368,683 - 11488 mRNA_3120 0.64 -0.1
368,698 + 11488 mRNA_3120 0.65 -1.0
368,809 - 11488 mRNA_3120 0.71 -0.3
368,918 + 11488 mRNA_3120 0.77 0.6
368,966 + 11488 mRNA_3120 0.79 1.1
368,967 + 11488 mRNA_3120 0.79 1.2
368,975 + 11488 mRNA_3120 0.80 -0.9
369,079 + 11488 mRNA_3120 0.85 0.5
369,090 + 11488 mRNA_3120 0.86 0.8
369,227 - 1.8
369,231 - -1.6
369,236 - 0.8
369,237 - 1.3
369,239 + 0.3
369,268 - 1.2
369,302 + 1.1
369,370 - 2.8
369,372 - -0.1
369,394 + 1.4
369,402 - 0.9
369,521 - 11489 mRNA_3121 0.48 2.3
369,635 + 11489 mRNA_3121 0.85 0.0
369,665 - 0.6
369,705 + 0.4
369,706 - 0.4
369,710 + -0.0
369,828 - -0.3
369,834 - 0.4
369,968 - 0.6
369,972 - 0.7
369,980 + 1.0
369,994 - 1.1
370,120 - 1.0
370,127 + 0.5
370,128 - 1.7
370,140 - -0.4
370,144 - -0.4
370,145 + -0.8
370,145 + -0.1
370,156 - 1.0
370,159 + -0.4
370,281 - 0.5
370,287 - -0.3
370,336 + 0.7
370,392 - 11490 mRNA_3122 0.13 0.6
370,581 - 11490 mRNA_3122 0.25 -0.5