Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3119

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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362,107 - -2.2
362,201 - -1.6
362,417 - 1.7
362,461 + 1.4
362,669 - 0.8
362,684 + -0.5
362,753 + -0.1
362,863 + 1.2
362,910 + -2.3
362,970 + 2.0
363,030 + -1.4
363,349 + 11487 mRNA_3119 0.13 0.9
363,462 + 11487 mRNA_3119 0.16 1.1
363,847 - 11487 mRNA_3119 0.25 1.3
363,963 - 11487 mRNA_3119 0.27 -0.1
364,104 + 11487 mRNA_3119 0.31 2.4
364,143 - 11487 mRNA_3119 0.31 -0.2
364,194 - 11487 mRNA_3119 0.33 -0.6
364,378 - 11487 mRNA_3119 0.37 -0.3
364,385 + 11487 mRNA_3119 0.37 -1.1
364,469 - 11487 mRNA_3119 0.39 1.7
364,518 - 11487 mRNA_3119 0.40 1.1
364,560 + 11487 mRNA_3119 0.41 -0.5
364,814 - 11487 mRNA_3119 0.47 0.4
364,932 - 11487 mRNA_3119 0.50 -0.3
364,954 + 11487 mRNA_3119 0.50 -2.3
365,154 - 11487 mRNA_3119 0.55 1.4
365,243 + 11487 mRNA_3119 0.57 1.4
365,259 - 11487 mRNA_3119 0.57 -0.0
365,390 - 11487 mRNA_3119 0.60 0.2
365,424 - 11487 mRNA_3119 0.61 -0.7
365,447 - 11487 mRNA_3119 0.62 1.3
365,637 - 11487 mRNA_3119 0.66 -0.5
366,070 + 11487 mRNA_3119 0.76 0.8
366,222 - 11487 mRNA_3119 0.80 0.2
366,307 + 11487 mRNA_3119 0.82 1.9
366,416 - 11487 mRNA_3119 0.84 0.5
366,560 + 11487 mRNA_3119 0.87 -0.5
366,566 + 11487 mRNA_3119 0.88 -0.2
366,729 + -0.5
366,856 + -0.8
366,994 - -1.3
366,995 - -2.6
367,159 + 0.1
367,164 + 0.7
367,165 + -0.6
367,167 + -0.1
367,198 - -0.1
367,201 - 0.1
367,207 + -1.3
367,211 + 0.3
367,317 - 1.8
367,318 + 0.2
367,326 - -0.6
367,329 - 0.2
367,473 - 0.7
367,478 - -0.6
367,501 + 0.2
367,603 - 1.9
367,763 - 11488 mRNA_3120 0.17 -0.1
367,924 - 11488 mRNA_3120 0.25 0.1
367,933 + 11488 mRNA_3120 0.26 -1.1
367,936 + 11488 mRNA_3120 0.26 0.4
367,990 - 11488 mRNA_3120 0.29 2.5
368,006 + 11488 mRNA_3120 0.29 -0.4
368,074 - 11488 mRNA_3120 0.33 0.4