Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3118

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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358,471 - 11485 mRNA_3117 0.66 0.3
358,472 + 11485 mRNA_3117 0.67 1.3
358,614 + 11485 mRNA_3117 0.80 -0.3
358,627 - 11485 mRNA_3117 0.81 0.8
358,627 + 11485 mRNA_3117 0.81 0.2
358,638 - 11485 mRNA_3117 0.82 -0.1
358,734 + 1.8
358,761 - -1.0
358,782 + -0.4
358,892 + 1.2
358,905 + 0.4
358,905 - 1.3
358,907 - 1.4
358,912 + 0.2
358,916 - -0.7
358,927 + -0.4
358,930 + -0.7
358,934 + -0.2
359,049 - 0.4
359,052 - 1.8
359,058 - 0.2
359,059 + 1.3
359,064 - -1.3
359,070 + 1.3
359,084 + -0.4
359,086 + 0.9
359,195 - 0.2
359,231 - -2.4
359,231 - -0.4
359,269 + -0.7
359,303 - 0.2
359,346 - -1.7
359,369 + 1.9
359,492 - 2.4
359,497 + 1.9
359,528 - 0.2
359,549 - -2.6
359,553 + -0.0
359,618 - 2.4
359,644 - 2.0
359,659 + -0.0
359,668 + -1.7
359,668 + -0.1
359,801 - 11486 mRNA_3118 0.14 -0.3
359,804 + 11486 mRNA_3118 0.14 -0.7
359,947 - 11486 mRNA_3118 0.20 -0.3
359,961 - 11486 mRNA_3118 0.20 0.8
360,161 + 11486 mRNA_3118 0.27 0.2
360,197 - 11486 mRNA_3118 0.29 0.3
360,365 - 11486 mRNA_3118 0.35 0.9
360,377 - 11486 mRNA_3118 0.35 0.3
360,482 + 11486 mRNA_3118 0.39 0.1
360,832 + 11486 mRNA_3118 0.52 1.8
360,930 + 11486 mRNA_3118 0.56 -0.3
360,956 - 11486 mRNA_3118 0.57 -1.0
361,004 + 11486 mRNA_3118 0.59 -0.9
361,107 - 11486 mRNA_3118 0.62 0.8
361,162 + 11486 mRNA_3118 0.64 1.5
361,436 - 11486 mRNA_3118 0.75 -0.2
361,446 - 11486 mRNA_3118 0.75 1.7
361,565 + 11486 mRNA_3118 0.79 0.6
361,692 - 11486 mRNA_3118 0.84 0.2
361,701 - 11486 mRNA_3118 0.84 -0.2
361,716 - 11486 mRNA_3118 0.85 0.0
361,744 + 11486 mRNA_3118 0.86 -1.7
362,107 - -2.2
362,201 - -1.6
362,417 - 1.7
362,461 + 1.4
362,669 - 0.8
362,684 + -0.5
362,753 + -0.1
362,863 + 1.2
362,910 + -2.3
362,970 + 2.0
363,030 + -1.4