Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3117

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483 mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356999 to 357616 11484 mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359416 to 362125 11486

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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356,839 - 0.7
356,990 - 2.9
357,161 + 11484 mRNA_3116 0.26 -0.3
357,164 - 11484 mRNA_3116 0.27 1.4
357,196 + 11484 mRNA_3116 0.32 -2.1
357,287 - 11484 mRNA_3116 0.47 1.5
357,305 + 11484 mRNA_3116 0.50 2.0
357,306 + 11484 mRNA_3116 0.50 -0.0
357,356 - 11484 mRNA_3116 0.58 -0.6
357,426 + 11484 mRNA_3116 0.69 -0.3
357,578 - 0.1
357,582 - -0.3
357,604 - 0.2
357,610 - -0.9
357,643 - 0.3
357,705 + -1.3
357,757 + 0.2
358,047 + 11485 mRNA_3117 0.27 -0.0
358,058 - 11485 mRNA_3117 0.28 0.3
358,077 - 11485 mRNA_3117 0.30 0.4
358,107 - 11485 mRNA_3117 0.33 0.7
358,368 - 11485 mRNA_3117 0.57 0.3
358,471 - 11485 mRNA_3117 0.66 0.3
358,472 + 11485 mRNA_3117 0.67 1.3
358,614 + 11485 mRNA_3117 0.80 -0.3
358,627 - 11485 mRNA_3117 0.81 0.8
358,627 + 11485 mRNA_3117 0.81 0.2
358,638 - 11485 mRNA_3117 0.82 -0.1
358,734 + 1.8
358,761 - -1.0
358,782 + -0.4
358,892 + 1.2
358,905 + 0.4
358,905 - 1.3
358,907 - 1.4
358,912 + 0.2
358,916 - -0.7
358,927 + -0.4
358,930 + -0.7
358,934 + -0.2
359,049 - 0.4
359,052 - 1.8
359,058 - 0.2
359,059 + 1.3
359,064 - -1.3
359,070 + 1.3
359,084 + -0.4
359,086 + 0.9
359,195 - 0.2
359,231 - -2.4
359,231 - -0.4
359,269 + -0.7
359,303 - 0.2
359,346 - -1.7
359,369 + 1.9
359,492 - 2.4
359,497 + 1.9
359,528 - 0.2
359,549 - -2.6
359,553 + -0.0
359,618 - 2.4
359,644 - 2.0
359,659 + -0.0
359,668 + -1.7
359,668 + -0.1
359,801 - 11486 mRNA_3118 0.14 -0.3
359,804 + 11486 mRNA_3118 0.14 -0.7