Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3115

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354324 to 355899 11482 mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483 mRNA_3116: 11484 - BLAST Pogo transposable element [Larimichthys crocea], at 356999 to 357616 11484 mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357751 to 358834 11485

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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355,242 + 11482 mRNA_3114 0.58 -0.3
355,382 + 11482 mRNA_3114 0.67 1.3
355,531 - 11482 mRNA_3114 0.77 -0.2
355,534 - 11482 mRNA_3114 0.77 -1.2
355,542 - 11482 mRNA_3114 0.77 3.0
355,547 + 11482 mRNA_3114 0.78 -0.6
355,807 + -0.8
355,826 + -0.1
355,832 + 1.8
355,971 - -0.3
355,978 + 1.0
355,981 + 2.2
355,982 + 0.5
356,010 + -0.2
356,111 - -1.6
356,130 + 0.5
356,131 + -0.0
356,259 - 11483 mRNA_3115 0.11 0.8
356,262 - 11483 mRNA_3115 0.11 2.4
356,282 - 11483 mRNA_3115 0.14 -0.6
356,358 - 11483 mRNA_3115 0.24 0.5
356,415 + 11483 mRNA_3115 0.32 1.4
356,571 + 11483 mRNA_3115 0.53 1.5
356,577 + 11483 mRNA_3115 0.54 -0.2
356,579 + 11483 mRNA_3115 0.54 -1.7
356,732 - 11483 mRNA_3115 0.75 3.0
356,839 - 0.7
356,990 - 2.9
357,161 + 11484 mRNA_3116 0.26 -0.3
357,164 - 11484 mRNA_3116 0.27 1.4
357,196 + 11484 mRNA_3116 0.32 -2.1
357,287 - 11484 mRNA_3116 0.47 1.5
357,305 + 11484 mRNA_3116 0.50 2.0
357,306 + 11484 mRNA_3116 0.50 -0.0
357,356 - 11484 mRNA_3116 0.58 -0.6
357,426 + 11484 mRNA_3116 0.69 -0.3
357,578 - 0.1
357,582 - -0.3
357,604 - 0.2
357,610 - -0.9
357,643 - 0.3
357,705 + -1.3
357,757 + 0.2