Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3113

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3112: 11480 - Hypothetical Protein, at 351079 to 352331 11480 mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352715 to 353874 11481 mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354324 to 355899 11482

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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351,716 + 11480 mRNA_3112 0.51 0.2
351,725 - 11480 mRNA_3112 0.52 -0.4
351,753 - 11480 mRNA_3112 0.54 0.7
351,772 - 11480 mRNA_3112 0.55 0.7
351,775 - 11480 mRNA_3112 0.56 -0.1
351,923 + 11480 mRNA_3112 0.67 0.5
352,060 - 11480 mRNA_3112 0.78 0.0
352,062 - 11480 mRNA_3112 0.78 0.2
352,175 + 11480 mRNA_3112 0.87 1.0
352,240 - -0.7
352,271 + 1.6
352,355 + -3.5
352,469 - 0.7
352,487 + -0.8
352,652 + -0.0
352,663 - -0.1
352,670 + -0.0
352,670 + 1.6
352,689 + 0.6
352,791 - 2.0
352,922 - 11481 mRNA_3113 0.18 -0.4
352,971 - 11481 mRNA_3113 0.22 -0.2
353,052 - 11481 mRNA_3113 0.29 0.3
353,069 - 11481 mRNA_3113 0.31 -0.2
353,200 + 11481 mRNA_3113 0.42 0.7
353,347 - 11481 mRNA_3113 0.54 1.0
353,364 + 11481 mRNA_3113 0.56 -1.7
353,502 + 11481 mRNA_3113 0.68 -0.0
353,507 - 11481 mRNA_3113 0.68 -1.3
353,537 - 11481 mRNA_3113 0.71 0.4
353,604 + 11481 mRNA_3113 0.77 -0.4
353,668 + 11481 mRNA_3113 0.82 0.8
353,774 - 0.2
353,781 + -0.2
353,783 - 0.5
353,795 - -0.3
353,805 + 0.1
353,967 + 3.1
353,976 + 1.4
354,041 - -0.2
354,076 - -0.4
354,078 - 1.8
354,083 + 2.3
354,087 - 2.5
354,089 + -1.4
354,091 + 0.7
354,094 - 0.5
354,097 + -0.5
354,100 + 0.3
354,101 - 1.4
354,103 + -1.9
354,223 - 0.6
354,248 + -0.2
354,266 + -0.4
354,519 - 11482 mRNA_3114 0.12 3.6
354,538 + 11482 mRNA_3114 0.14 1.2
354,557 - 11482 mRNA_3114 0.15 -1.0
354,670 - 11482 mRNA_3114 0.22 -0.1