Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3106

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334494 to 336059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336211 to 338758 11474 mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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335,744 + 11473 mRNA_3105 0.80 0.1
335,862 - 11473 mRNA_3105 0.87 -0.1
336,033 + -0.7
336,033 - -0.1
336,034 - -0.1
336,036 + -0.9
336,061 - 2.3
336,077 + 1.7
336,140 - 0.4
336,147 - -0.5
336,159 - 1.1
336,161 - 0.4
336,170 - -2.1
336,173 + 1.6
336,175 - 0.8
336,178 + 1.3
336,187 - -0.4
336,190 + 0.1
336,198 + 1.6
336,205 - -0.6
336,205 + 0.2
336,312 - 0.1
336,323 + -0.1
336,327 + 0.2
336,329 + 0.7
336,341 - 1.0
336,345 + -0.5
336,457 - -0.4
336,459 + 0.8
336,481 - 11474 mRNA_3106 0.11 0.5
336,485 + 11474 mRNA_3106 0.11 -0.1
336,491 - 11474 mRNA_3106 0.11 0.9
336,634 - 11474 mRNA_3106 0.17 2.7
336,639 + 11474 mRNA_3106 0.17 2.0
336,648 - 11474 mRNA_3106 0.17 0.1
336,649 - 11474 mRNA_3106 0.17 2.0
336,775 + 11474 mRNA_3106 0.22 0.6
336,787 - 11474 mRNA_3106 0.23 -0.2
336,935 + 11474 mRNA_3106 0.28 -0.7
337,067 - 11474 mRNA_3106 0.34 0.2
337,070 - 11474 mRNA_3106 0.34 -0.1
337,070 - 11474 mRNA_3106 0.34 0.9
337,192 - 11474 mRNA_3106 0.39 0.9
337,232 + 11474 mRNA_3106 0.40 1.1
337,614 + 11474 mRNA_3106 0.55 0.7
337,654 - 11474 mRNA_3106 0.57 -0.6
337,833 + 11474 mRNA_3106 0.64 0.0
337,956 - 11474 mRNA_3106 0.68 -0.1
337,958 + 11474 mRNA_3106 0.69 -0.6
337,961 + 11474 mRNA_3106 0.69 -0.5
338,104 - 11474 mRNA_3106 0.74 -2.3
338,269 + 11474 mRNA_3106 0.81 -0.1
338,282 - 11474 mRNA_3106 0.81 -0.8
338,289 + 11474 mRNA_3106 0.82 -0.8
338,382 - 11474 mRNA_3106 0.85 -1.4
338,568 - -0.1
338,572 - 0.9
338,691 - -0.3
338,702 - 0.5
338,704 + 1.7
338,729 + -0.3
338,811 + 1.7
338,850 - -2.5
339,011 + 1.3
339,016 - -0.8
339,021 - -1.1
339,152 - 0.0
339,300 + 1.1
339,310 + 0.5
339,565 - 11475 mRNA_3107 0.26 -1.6