Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3103

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325747 to 328243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328830 to 331254 11471 mRNA_3104: 11472 - HMMPfam-Uncharacterized conserved protein (DUF2156)-PF09924, at 331820 to 333279 11472

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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327,831 + 11470 mRNA_3102 0.83 0.7
327,869 - 11470 mRNA_3102 0.85 -2.9
327,876 - 11470 mRNA_3102 0.85 0.7
328,304 - -0.0
328,318 - -0.4
328,320 - 0.1
328,341 + 0.6
328,457 + 1.0
328,496 + -0.3
328,548 - -0.7
328,864 + 0.5
328,932 + 2.1
328,998 - 1.2
329,099 - 11471 mRNA_3103 0.11 -0.9
329,100 + 11471 mRNA_3103 0.11 0.2
329,100 + 11471 mRNA_3103 0.11 0.9
329,961 + 11471 mRNA_3103 0.47 0.5
329,963 - 11471 mRNA_3103 0.47 0.1
330,001 + 11471 mRNA_3103 0.48 -0.5
330,436 + 11471 mRNA_3103 0.66 -0.7
330,609 + 11471 mRNA_3103 0.73 -1.0
330,999 + 11471 mRNA_3103 0.89 -0.6
331,303 - 0.8
331,419 + 1.5
331,430 + 1.3
331,584 - 2.0
331,593 + 0.8
331,859 + -1.5
331,864 + -0.7
331,875 - 2.6
331,877 + -0.2
332,159 - 11472 mRNA_3104 0.23 0.9
332,167 + 11472 mRNA_3104 0.24 -0.5