Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3102

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321739 to 325524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325747 to 328243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328830 to 331254 11471

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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324,799 - 11469 mRNA_3101 0.81 -0.0
324,964 - 11469 mRNA_3101 0.85 0.5
324,971 + 11469 mRNA_3101 0.85 -0.3
325,072 + 11469 mRNA_3101 0.88 -0.7
325,117 + 11469 mRNA_3101 0.89 -0.0
325,139 + 11469 mRNA_3101 0.90 0.5
325,143 + 11469 mRNA_3101 0.90 -0.2
325,252 - -0.1
325,291 + 1.2
325,413 - -0.0
325,413 - -1.0
325,421 - 0.3
325,435 + 0.9
325,445 - 1.5
325,534 - 0.3
325,557 + -0.4
325,558 - -0.4
325,559 - -0.6
325,561 - -0.4
325,562 - 1.1
325,568 - -3.5
325,568 - -0.2
325,572 + 2.1
325,575 - 0.4
325,577 - -1.0
325,579 - 0.2
325,581 - 1.8
325,595 - 0.6
325,595 - 0.9
325,595 - -2.0
325,596 + 2.8
325,601 + 1.6
325,603 - 1.1
325,722 + 4.2
325,735 - -0.2
325,750 - -0.0
325,762 - 0.8
325,763 - -0.3
325,763 - -0.4
325,763 - 0.5
325,763 - 0.7
325,763 - -0.4
325,763 - -0.1
325,764 - 0.0
325,768 + 1.6
325,768 - 0.2
325,769 - -0.5
325,770 + 1.8
325,771 + 1.1
325,772 + 2.4
325,772 - 2.5
325,775 + 0.8
325,777 + 1.6
325,786 - 1.7
325,795 + 0.8
325,804 - 1.7
325,823 + 3.9
325,871 + 0.9
325,874 - 2.2
325,891 + -0.2
325,894 - 1.8
325,902 + 0.0
325,903 - 1.2
325,904 + -0.0
325,906 - 2.9
325,909 + 1.2
325,918 - -1.2
325,918 - -1.9
325,921 - 1.6
325,922 + 0.1
325,922 + 0.0
325,923 - 0.5
325,924 + 1.4
325,928 + 0.6
325,929 + 2.0
325,930 - 0.2
325,932 - -1.8
325,935 - 0.4
325,936 + -0.4
325,944 + -1.0
325,946 - 0.0
325,950 + -0.3
325,952 + 0.7
325,953 - 1.8
325,957 - 0.5
326,077 - 11470 mRNA_3102 0.13 -1.0
326,078 - 11470 mRNA_3102 0.13 1.5
326,084 + 11470 mRNA_3102 0.13 1.8
326,089 - 11470 mRNA_3102 0.14 1.4
326,090 - 11470 mRNA_3102 0.14 -1.0
326,091 - 11470 mRNA_3102 0.14 1.0
326,095 - 11470 mRNA_3102 0.14 2.0
326,096 - 11470 mRNA_3102 0.14 0.8
326,101 + 11470 mRNA_3102 0.14 -0.4
326,101 + 11470 mRNA_3102 0.14 0.2
326,117 + 11470 mRNA_3102 0.15 1.3
326,122 + 11470 mRNA_3102 0.15 0.2
326,221 + 11470 mRNA_3102 0.19 -0.1
326,223 - 11470 mRNA_3102 0.19 0.6
326,226 - 11470 mRNA_3102 0.19 -0.1
326,235 - 11470 mRNA_3102 0.20 0.9
326,249 + 11470 mRNA_3102 0.20 -1.6
326,251 - 11470 mRNA_3102 0.20 0.2
326,263 + 11470 mRNA_3102 0.21 1.7
326,270 + 11470 mRNA_3102 0.21 -0.1
326,294 + 11470 mRNA_3102 0.22 0.3
326,306 + 11470 mRNA_3102 0.22 -0.6
326,405 + 11470 mRNA_3102 0.26 -1.0
326,417 - 11470 mRNA_3102 0.27 0.7
326,498 + 11470 mRNA_3102 0.30 1.7
326,513 + 11470 mRNA_3102 0.31 -0.6
326,554 - 11470 mRNA_3102 0.32 0.9
326,562 + 11470 mRNA_3102 0.33 -0.4
326,585 + 11470 mRNA_3102 0.34 -1.0
326,810 - 11470 mRNA_3102 0.43 -0.9
326,832 + 11470 mRNA_3102 0.43 -0.1
326,835 + 11470 mRNA_3102 0.44 -0.1
326,851 + 11470 mRNA_3102 0.44 -0.6
326,855 - 11470 mRNA_3102 0.44 0.9
326,903 - 11470 mRNA_3102 0.46 1.3
326,988 - 11470 mRNA_3102 0.50 1.1
326,994 + 11470 mRNA_3102 0.50 1.4
327,138 - 11470 mRNA_3102 0.56 -2.0
327,164 + 11470 mRNA_3102 0.57 1.2
327,165 - 11470 mRNA_3102 0.57 0.4
327,273 - 11470 mRNA_3102 0.61 1.2
327,434 - 11470 mRNA_3102 0.68 -0.4
327,602 + 11470 mRNA_3102 0.74 -0.5
327,713 - 11470 mRNA_3102 0.79 0.9
327,728 - 11470 mRNA_3102 0.79 1.9
327,759 - 11470 mRNA_3102 0.81 -0.5
327,831 + 11470 mRNA_3102 0.83 0.7
327,869 - 11470 mRNA_3102 0.85 -2.9
327,876 - 11470 mRNA_3102 0.85 0.7
328,304 - -0.0
328,318 - -0.4
328,320 - 0.1
328,341 + 0.6
328,457 + 1.0
328,496 + -0.3
328,548 - -0.7
328,864 + 0.5
328,932 + 2.1
328,998 - 1.2
329,099 - 11471 mRNA_3103 0.11 -0.9
329,100 + 11471 mRNA_3103 0.11 0.2
329,100 + 11471 mRNA_3103 0.11 0.9