Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3094

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3093: 11461 - Hypothetical Protein, at 304363 to 305282 11461 mRNA_3094: 11462 - HMMPfam-Bestrophin, RFP-TM, chloride channel-PF01062, at 305611 to 307227 11462 mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307460 to 310020 11463

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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304,687 - 11461 mRNA_3093 0.35 0.5
304,695 + 11461 mRNA_3093 0.36 0.3
304,753 + 11461 mRNA_3093 0.42 -1.3
304,926 - 11461 mRNA_3093 0.61 0.7
304,959 + 11461 mRNA_3093 0.65 2.2
304,999 + 11461 mRNA_3093 0.69 0.0
305,056 - 11461 mRNA_3093 0.75 0.3
305,060 - 11461 mRNA_3093 0.76 1.2
305,077 - 11461 mRNA_3093 0.78 -0.1
305,208 + 1.9
305,211 - -0.2
305,219 + 0.9
305,223 + 0.8
305,339 - 0.8
305,364 + 0.7
305,365 + 0.8
305,367 + 0.7
305,369 + 0.6
305,376 - 0.4
305,377 + 0.1
305,378 - -0.3
305,381 - 0.7
305,381 - 0.9
305,470 + 1.0
305,481 - -0.2
305,483 + 0.1
305,492 + -0.2
305,492 + 0.6
305,508 + -0.0
305,508 - 0.8
305,512 - -0.1
305,513 - 1.3
305,516 - -0.4
305,516 + 1.2
305,520 - -0.6
305,522 + -0.4
305,524 - -0.1
305,535 - 0.6
305,542 + -0.2
305,562 - 0.1
305,628 + 1.2
305,636 - 2.1
305,660 - 1.9
305,664 - 0.5
305,680 + 1.8
305,683 - 0.4
305,687 + 1.0
305,694 - 0.9
305,725 - -2.4
305,797 - 11462 mRNA_3094 0.12 -2.4
305,803 - 11462 mRNA_3094 0.12 -0.7
305,816 + 11462 mRNA_3094 0.13 2.5
305,834 - 11462 mRNA_3094 0.14 -0.9
305,847 + 11462 mRNA_3094 0.15 2.0
305,848 + 11462 mRNA_3094 0.15 -1.7
305,876 - 11462 mRNA_3094 0.16 1.4
305,931 - 11462 mRNA_3094 0.20 -1.2
305,979 + 11462 mRNA_3094 0.23 -1.3
305,989 + 11462 mRNA_3094 0.23 1.8
306,002 - 11462 mRNA_3094 0.24 0.8
306,112 + 11462 mRNA_3094 0.31 1.5
306,128 + 11462 mRNA_3094 0.32 2.7
306,252 - 11462 mRNA_3094 0.40 0.1
306,353 + 11462 mRNA_3094 0.46 0.4
306,724 + 11462 mRNA_3094 0.69 -0.5
306,852 - 11462 mRNA_3094 0.77 1.4
306,857 - 11462 mRNA_3094 0.77 -1.0
306,973 - 11462 mRNA_3094 0.84 -0.6
307,007 - 11462 mRNA_3094 0.86 0.2
307,139 - 0.6
307,145 + 1.0
307,151 + 1.4
307,152 - 1.2
307,259 - 0.8
307,268 - 1.5
307,269 + -1.7
307,271 + 0.3
307,273 - 0.9
307,273 - -0.1
307,274 + 0.7
307,278 + 0.9
307,281 + 0.6
307,284 - -1.2
307,288 + -0.7
307,290 + 2.9
307,294 + 2.6
307,294 + -0.1
307,294 - 2.0
307,297 + 0.4
307,297 - 0.6
307,300 + 2.5
307,302 + 0.7
307,303 - 1.3
307,304 + 1.3
307,305 + 1.0
307,305 + 1.3
307,308 - 0.5
307,312 - -2.0
307,326 + 0.8
307,332 + -0.4
307,333 + -0.0
307,336 - -0.5
307,344 + 0.3
307,353 + -0.1
307,408 + -0.2
307,449 + 2.1
307,475 - 1.8
307,621 - -1.2
307,728 - 11463 mRNA_3095 0.10 -0.4
307,765 - 11463 mRNA_3095 0.12 0.7
307,774 + 11463 mRNA_3095 0.12 1.6
307,776 + 11463 mRNA_3095 0.12 -0.3
307,780 - 11463 mRNA_3095 0.12 0.2
307,781 + 11463 mRNA_3095 0.13 2.5
307,902 - 11463 mRNA_3095 0.17 0.9
308,226 - 11463 mRNA_3095 0.30 -2.5