Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3086

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284368 to 286217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286949 to 288955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289552 to 290619 11455

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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286,039 + 1.0
286,151 + 0.5
286,335 + -0.8
286,455 - 0.2
286,462 - 0.9
286,608 - 0.0
286,614 + -0.0
286,614 - 0.2
286,616 - 0.7
286,754 - 1.2
287,058 - 1.0
287,365 + 11454 mRNA_3086 0.21 1.3
287,373 - 11454 mRNA_3086 0.21 0.8
287,645 + 11454 mRNA_3086 0.35 1.1
287,674 - 11454 mRNA_3086 0.36 0.9
288,092 + 11454 mRNA_3086 0.57 0.0
288,094 + 11454 mRNA_3086 0.57 -0.2
288,227 + 11454 mRNA_3086 0.64 1.2
288,381 - 11454 mRNA_3086 0.71 0.5
288,602 - 11454 mRNA_3086 0.82 -0.8
288,603 + 11454 mRNA_3086 0.82 0.5
288,681 + 11454 mRNA_3086 0.86 0.1
288,693 + 11454 mRNA_3086 0.87 2.8
288,948 - 0.3
288,957 + 2.7
289,069 - 1.1
289,081 + -0.2
289,094 - 1.3
289,097 - 0.6
289,098 - 1.0
289,107 - -0.0
289,110 - 0.9
289,115 - -0.4
289,119 + 0.5
289,243 - 0.7
289,247 + 0.0
289,249 + -1.3
289,280 + 2.3
289,403 + 0.3
289,405 + 0.3
289,410 + -1.9
289,566 + 0.4
289,698 + 11455 mRNA_3087 0.14 0.7