Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3077

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3076: 11444 - KOG4497 Uncharacterized conserved protein WDR8, contains WD repeats, at 261811 to 264179 11444 mRNA_3077: 11445 - K07542 PIGV phosphatidylinositol glycan, class V, at 264209 to 265729 11445 mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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263,261 - 11444 mRNA_3076 0.61 1.4
263,337 + 11444 mRNA_3076 0.64 3.1
263,497 + 11444 mRNA_3076 0.71 -1.0
263,640 - 11444 mRNA_3076 0.77 -1.1
263,682 - 11444 mRNA_3076 0.79 -0.7
263,685 + 11444 mRNA_3076 0.79 2.0
263,846 - 11444 mRNA_3076 0.86 -0.1
264,076 - 2.3
264,076 - -0.2
264,110 + 0.2
264,131 + 0.2
264,256 + 2.1
264,278 + -0.2
264,278 + -0.8
264,282 + 2.2
264,369 - 11445 mRNA_3077 0.11 0.2
264,402 + 11445 mRNA_3077 0.13 -2.7
264,706 - 11445 mRNA_3077 0.33 -1.3
264,758 - 11445 mRNA_3077 0.36 1.5
264,817 - 11445 mRNA_3077 0.40 0.7
264,867 - 11445 mRNA_3077 0.43 -0.6
264,868 + 11445 mRNA_3077 0.43 -0.4
264,880 + 11445 mRNA_3077 0.44 -0.9
264,914 - 11445 mRNA_3077 0.46 0.8
265,060 - 11445 mRNA_3077 0.56 0.1
265,094 + 11445 mRNA_3077 0.58 -1.0
265,114 + 11445 mRNA_3077 0.60 0.1
265,122 + 11445 mRNA_3077 0.60 -0.9
265,137 - 11445 mRNA_3077 0.61 1.0
265,148 - 11445 mRNA_3077 0.62 -0.7
265,153 + 11445 mRNA_3077 0.62 0.8
265,160 - 11445 mRNA_3077 0.63 -0.9
265,180 - 11445 mRNA_3077 0.64 -0.1
265,258 + 11445 mRNA_3077 0.69 3.5
265,296 + 11445 mRNA_3077 0.71 0.1
265,340 - 11445 mRNA_3077 0.74 0.3
265,415 - 11445 mRNA_3077 0.79 1.8
265,426 - 11445 mRNA_3077 0.80 0.4
265,433 - 11445 mRNA_3077 0.80 0.0
265,437 - 11445 mRNA_3077 0.81 0.3
265,437 - 11445 mRNA_3077 0.81 0.0
265,447 + 11445 mRNA_3077 0.81 0.6
265,545 - 11445 mRNA_3077 0.88 1.0
265,602 + -0.2
265,605 + -0.4
265,611 + 1.1
265,625 - 0.2
265,724 + 1.2
265,731 - 0.2
265,738 - 0.2
265,740 - 0.7
265,748 - -3.2
265,758 - 0.0
265,890 - -2.2
265,905 + 0.1
265,915 - -0.8
266,184 + 3.5
266,494 - 11446 mRNA_3078 0.13 -1.5
266,538 + 11446 mRNA_3078 0.14 -0.2
266,610 + 11446 mRNA_3078 0.15 4.1
266,642 - 11446 mRNA_3078 0.16 0.9