Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3072

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3071: 11439 - Hypothetical Protein, at 245578 to 247225 11439 mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248202 to 249247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249401 to 250160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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247,284 + -1.3
247,294 - -0.6
247,297 + -4.3
247,311 - 0.5
247,313 - 0.4
247,314 + 1.5
247,444 - 3.0
247,467 - 0.0
247,589 - -0.3
247,597 - 0.3
247,599 + 0.5
247,603 - -1.6
247,605 + -0.5
247,615 + 0.1
247,617 - -0.4
247,618 - -1.2
247,620 + -1.9
247,623 + 0.5
247,625 - -0.4
247,745 + 0.8
247,757 + 0.6
247,765 - 0.6
247,771 + -1.0
247,868 + -0.1
247,908 - 2.3
247,917 - 0.6
247,922 + 0.2
248,052 - -0.8
248,054 - -0.1
248,064 + 0.1
248,077 - 0.6
248,381 + 11440 mRNA_3072 0.17 0.0
248,413 + 11440 mRNA_3072 0.20 1.3
248,507 + 11440 mRNA_3072 0.29 1.5
248,537 - 11440 mRNA_3072 0.32 0.4
248,546 + 11440 mRNA_3072 0.33 1.9
248,651 + 11440 mRNA_3072 0.43 1.2
248,686 - 11440 mRNA_3072 0.46 2.1
248,827 - 11440 mRNA_3072 0.60 -1.8
248,923 - 11440 mRNA_3072 0.69 0.0
248,928 + 11440 mRNA_3072 0.69 0.2
248,964 + 11440 mRNA_3072 0.73 1.2
248,973 + 11440 mRNA_3072 0.74 0.7
249,059 + 11440 mRNA_3072 0.82 1.7
249,406 + 0.8
249,430 + -2.3
249,552 + 11441 mRNA_3073 0.20 0.1
249,695 + 11441 mRNA_3073 0.39 0.2
249,696 - 11441 mRNA_3073 0.39 -2.2
249,701 + 11441 mRNA_3073 0.39 1.3
249,762 - 11441 mRNA_3073 0.47 0.0
249,822 - 11441 mRNA_3073 0.55 0.7
249,841 + 11441 mRNA_3073 0.58 0.2
249,845 + 11441 mRNA_3073 0.58 1.0
249,858 + 11441 mRNA_3073 0.60 1.8
249,860 + 11441 mRNA_3073 0.60 -0.3
249,861 + 11441 mRNA_3073 0.61 1.4
249,898 + 11441 mRNA_3073 0.65 -1.5
249,927 - 11441 mRNA_3073 0.69 -1.3
249,978 + 11441 mRNA_3073 0.76 0.3
249,983 - 11441 mRNA_3073 0.77 -0.3
250,002 + 11441 mRNA_3073 0.79 1.3
250,015 + 11441 mRNA_3073 0.81 1.1
250,017 - 11441 mRNA_3073 0.81 4.2
250,017 - 11441 mRNA_3073 0.81 0.2
250,030 - 11441 mRNA_3073 0.83 -0.5
250,132 + 2.2
250,137 - 1.0
250,138 + -2.2
250,143 + -1.1
250,166 - -0.5