Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3068

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3067: 11435 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 235279 to 236676 11435 mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236980 to 239400 11436 mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239616 to 241978 11437

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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235,987 - 11435 mRNA_3067 0.51 0.3
236,002 - 11435 mRNA_3067 0.52 -2.0
236,005 + 11435 mRNA_3067 0.52 0.3
236,525 - 11435 mRNA_3067 0.89 0.8
236,631 - 0.3
236,681 - 1.7
236,692 - -0.4
236,706 + 0.4
236,726 - 0.2
236,848 - 1.1
236,853 + 1.8
236,971 - 0.6
236,973 + -1.5
236,975 - -0.9
237,304 - 11436 mRNA_3068 0.13 -1.0
237,434 - 11436 mRNA_3068 0.19 -0.8
237,434 + 11436 mRNA_3068 0.19 -2.7
237,438 - 11436 mRNA_3068 0.19 1.3
237,544 - 11436 mRNA_3068 0.23 -0.3
237,574 - 11436 mRNA_3068 0.25 -0.3
237,693 + 11436 mRNA_3068 0.29 1.2
237,700 + 11436 mRNA_3068 0.30 -1.2
237,831 + 11436 mRNA_3068 0.35 0.9
237,905 + 11436 mRNA_3068 0.38 0.5
237,910 + 11436 mRNA_3068 0.38 -0.5
238,011 + 11436 mRNA_3068 0.43 -0.1
238,024 + 11436 mRNA_3068 0.43 -0.3
238,033 + 11436 mRNA_3068 0.43 -0.4
238,152 - 11436 mRNA_3068 0.48 1.2
238,444 - 11436 mRNA_3068 0.60 -0.6
238,572 - 11436 mRNA_3068 0.66 -1.0
238,592 - 11436 mRNA_3068 0.67 -0.5
238,599 + 11436 mRNA_3068 0.67 -0.8
238,667 + 11436 mRNA_3068 0.70 -0.7
238,754 + 11436 mRNA_3068 0.73 0.4
239,052 - 11436 mRNA_3068 0.86 0.3
239,159 - -2.0
239,177 + 0.6
239,178 + -0.2
239,181 - 0.3
239,184 - 1.7
239,200 + 0.1
239,206 - -0.2
239,208 - 1.9
239,209 + -2.1
239,211 + 0.6
239,318 + 2.9
239,321 + -0.1
239,335 - 0.6
239,347 - -0.3
239,353 + 0.8
239,365 + 0.6
239,369 - -0.6
239,372 + -0.0
239,474 - 0.1
239,487 - -0.6
239,496 + 0.0
239,496 + 0.4
239,511 + 0.1
239,516 + 0.2
239,521 - 0.8
239,632 - -1.2
239,671 + -0.5
239,671 + -0.5
239,830 + 0.6
239,919 - 11437 mRNA_3069 0.13 0.4
239,973 + 11437 mRNA_3069 0.15 -0.1
240,355 - 11437 mRNA_3069 0.31 -0.1