Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3065

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3064: 11432 - K17617 CTDNEP1, DULLARD, NEM1 CTD nuclear envelope phosphatase 1, at 229860 to 230752 11432 mRNA_3065: 11433 - Hypothetical Protein, at 230805 to 232101 11433 mRNA_3066: 11434 - K13449 PR1 pathogenesis-related protein 1, at 232396 to 233465 11434

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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229,829 - 2.4
229,909 - 0.9
229,958 + 11432 mRNA_3064 0.11 0.3
229,985 - 11432 mRNA_3064 0.14 -0.4
229,999 - 11432 mRNA_3064 0.16 -1.3
230,450 + 11432 mRNA_3064 0.66 0.0
230,730 - 3.0
230,789 - 1.9
230,883 + -0.1
230,892 + 0.6
231,040 - 11433 mRNA_3065 0.18 0.3
231,169 - 11433 mRNA_3065 0.28 0.2
231,324 + 11433 mRNA_3065 0.40 -0.7
231,459 - 11433 mRNA_3065 0.50 0.8
231,461 - 11433 mRNA_3065 0.51 2.1
231,465 - 11433 mRNA_3065 0.51 0.4
231,467 + 11433 mRNA_3065 0.51 1.1
231,468 + 11433 mRNA_3065 0.51 0.1
231,489 + 11433 mRNA_3065 0.53 0.7
231,592 + 11433 mRNA_3065 0.61 -0.8
231,632 + 11433 mRNA_3065 0.64 2.7
231,752 + 11433 mRNA_3065 0.73 0.0
231,758 + 11433 mRNA_3065 0.73 1.2
231,764 + 11433 mRNA_3065 0.74 -0.4
231,771 + 11433 mRNA_3065 0.74 0.2
231,778 - 11433 mRNA_3065 0.75 -0.0
231,780 - 11433 mRNA_3065 0.75 -0.7
231,783 + 11433 mRNA_3065 0.75 2.6
231,911 - 11433 mRNA_3065 0.85 4.1
231,924 + 11433 mRNA_3065 0.86 0.3
231,927 + 11433 mRNA_3065 0.87 -0.4
231,948 + 11433 mRNA_3065 0.88 2.5
232,071 - 1.0
232,072 - 0.0
232,086 + -0.3
232,178 - 0.6
232,205 - 1.4
232,227 - -2.2
232,384 - -3.5
232,516 - 11434 mRNA_3066 0.11 -0.5
232,656 + 11434 mRNA_3066 0.24 0.4
232,659 - 11434 mRNA_3066 0.25 0.4
232,951 - 11434 mRNA_3066 0.52 -0.4
232,952 - 11434 mRNA_3066 0.52 1.7