Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3062

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429 mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225232 to 227100 11430 mRNA_3063: 11431 - Hypothetical Protein, at 227293 to 229777 11431

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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224,567 - 11429 mRNA_3061 0.90 0.9
224,586 + -1.0
224,587 - 1.6
224,626 - 0.0
224,700 + -0.3
224,815 + 0.4
224,822 - -0.4
224,847 + 0.0
224,854 - 2.0
224,866 + 1.4
224,872 + -2.1
224,957 + 1.6
225,033 + -0.1
225,103 - -2.2
225,135 - 1.0
225,138 + 1.3
225,140 + -1.3
225,140 - -0.3
225,142 + 0.3
225,146 + -0.1
225,147 + 0.4
225,148 + 0.4
225,158 + 0.1
225,264 + 0.4
225,334 - 0.4
225,340 - 0.5
225,347 + -0.2
225,450 - 11430 mRNA_3062 0.12 2.7
225,473 + 11430 mRNA_3062 0.13 -0.7
225,555 + 11430 mRNA_3062 0.17 0.9
225,594 - 11430 mRNA_3062 0.19 0.5
225,610 - 11430 mRNA_3062 0.20 0.1
225,610 + 11430 mRNA_3062 0.20 -0.1
225,636 - 11430 mRNA_3062 0.22 -0.7
225,644 + 11430 mRNA_3062 0.22 -0.6
225,646 - 11430 mRNA_3062 0.22 1.7
225,651 - 11430 mRNA_3062 0.22 0.2
225,705 + 11430 mRNA_3062 0.25 0.5
225,706 - 11430 mRNA_3062 0.25 -0.5
225,748 - 11430 mRNA_3062 0.28 -0.0
225,761 - 11430 mRNA_3062 0.28 -0.7
225,840 + 11430 mRNA_3062 0.33 -1.5
225,867 + 11430 mRNA_3062 0.34 -0.6
225,880 + 11430 mRNA_3062 0.35 -0.1
225,905 - 11430 mRNA_3062 0.36 2.2
226,065 - 11430 mRNA_3062 0.45 -0.5
226,070 - 11430 mRNA_3062 0.45 2.2
226,071 + 11430 mRNA_3062 0.45 1.9
226,071 + 11430 mRNA_3062 0.45 0.6
226,278 - 11430 mRNA_3062 0.56 -0.3
226,346 - 11430 mRNA_3062 0.60 1.0
226,346 - 11430 mRNA_3062 0.60 0.3
226,460 + 11430 mRNA_3062 0.66 0.2
226,593 + 11430 mRNA_3062 0.73 -0.2
226,680 + 11430 mRNA_3062 0.77 0.5
226,730 - 11430 mRNA_3062 0.80 0.2
226,765 - 11430 mRNA_3062 0.82 0.1
226,769 - 11430 mRNA_3062 0.82 -0.0
226,769 + 11430 mRNA_3062 0.82 -0.4
226,777 + 11430 mRNA_3062 0.83 1.2
226,865 + 11430 mRNA_3062 0.87 2.8
226,915 - 0.5
226,915 - 1.0
226,925 + 0.0
227,049 - 0.6
227,068 - 2.6
227,164 - 0.8
227,164 - 0.1
227,188 - -0.0
227,201 - 0.0
227,220 + 1.1
227,240 + 1.7
227,250 - 2.5
227,339 + 0.3
227,618 + 11431 mRNA_3063 0.13 -0.1
227,657 - 11431 mRNA_3063 0.15 0.4
227,813 - 11431 mRNA_3063 0.21 -1.3
227,938 + 11431 mRNA_3063 0.26 0.5
228,096 - 11431 mRNA_3063 0.32 0.3