Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3061

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219691 to 221317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429 mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225232 to 227100 11430

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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221,253 + -0.1
221,380 - -2.9
221,387 + 1.7
221,397 + -0.1
221,489 - 0.4
221,818 + 0.6
221,962 + -1.5
222,113 + 11429 mRNA_3061 0.10 -1.6
222,222 - 11429 mRNA_3061 0.14 0.4
222,241 - 11429 mRNA_3061 0.14 -1.1
222,268 - 11429 mRNA_3061 0.15 0.1
222,529 + 11429 mRNA_3061 0.24 0.6
222,653 - 11429 mRNA_3061 0.28 -1.3
222,710 + 11429 mRNA_3061 0.29 0.8
222,940 - 11429 mRNA_3061 0.37 -0.1
222,971 - 11429 mRNA_3061 0.38 -0.7
222,976 - 11429 mRNA_3061 0.38 0.2
223,276 - 11429 mRNA_3061 0.48 0.2
223,302 - 11429 mRNA_3061 0.49 -0.4
223,308 - 11429 mRNA_3061 0.49 0.2
223,384 - 11429 mRNA_3061 0.51 1.4
223,421 + 11429 mRNA_3061 0.53 -0.0
223,463 - 11429 mRNA_3061 0.54 2.2
223,483 - 11429 mRNA_3061 0.55 1.3
223,556 + 11429 mRNA_3061 0.57 -1.9
223,598 + 11429 mRNA_3061 0.58 -1.7
223,604 + 11429 mRNA_3061 0.59 2.0
223,660 - 11429 mRNA_3061 0.60 0.3
223,676 - 11429 mRNA_3061 0.61 -1.1
223,700 + 11429 mRNA_3061 0.62 -0.0
223,851 + 11429 mRNA_3061 0.67 -0.0
223,926 + 11429 mRNA_3061 0.69 1.4
224,006 + 11429 mRNA_3061 0.72 -0.0
224,016 - 11429 mRNA_3061 0.72 0.7
224,130 - 11429 mRNA_3061 0.76 0.6
224,567 - 11429 mRNA_3061 0.90 0.9
224,586 + -1.0
224,587 - 1.6
224,626 - 0.0
224,700 + -0.3
224,815 + 0.4
224,822 - -0.4
224,847 + 0.0
224,854 - 2.0
224,866 + 1.4
224,872 + -2.1
224,957 + 1.6
225,033 + -0.1
225,103 - -2.2
225,135 - 1.0
225,138 + 1.3
225,140 + -1.3
225,140 - -0.3
225,142 + 0.3
225,146 + -0.1
225,147 + 0.4
225,148 + 0.4
225,158 + 0.1
225,264 + 0.4
225,334 - 0.4
225,340 - 0.5
225,347 + -0.2
225,450 - 11430 mRNA_3062 0.12 2.7
225,473 + 11430 mRNA_3062 0.13 -0.7
225,555 + 11430 mRNA_3062 0.17 0.9
225,594 - 11430 mRNA_3062 0.19 0.5
225,610 - 11430 mRNA_3062 0.20 0.1
225,610 + 11430 mRNA_3062 0.20 -0.1
225,636 - 11430 mRNA_3062 0.22 -0.7
225,644 + 11430 mRNA_3062 0.22 -0.6
225,646 - 11430 mRNA_3062 0.22 1.7
225,651 - 11430 mRNA_3062 0.22 0.2
225,705 + 11430 mRNA_3062 0.25 0.5
225,706 - 11430 mRNA_3062 0.25 -0.5
225,748 - 11430 mRNA_3062 0.28 -0.0
225,761 - 11430 mRNA_3062 0.28 -0.7
225,840 + 11430 mRNA_3062 0.33 -1.5
225,867 + 11430 mRNA_3062 0.34 -0.6
225,880 + 11430 mRNA_3062 0.35 -0.1