Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3060

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3059: 11427 - Hypothetical Protein, at 217589 to 219191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219691 to 221317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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218,747 + 11427 mRNA_3059 0.72 -2.3
218,798 - 11427 mRNA_3059 0.75 0.1
218,892 - 11427 mRNA_3059 0.81 0.6
218,996 + 11427 mRNA_3059 0.88 0.8
219,037 + -0.3
219,182 - -0.3
219,183 - 0.5
219,309 - 0.1
219,330 - 1.3
219,331 - -0.0
219,346 - -2.0
219,346 - 1.2
219,347 + 1.0
219,451 - -0.9
219,453 + -0.9
219,467 - 2.4
219,484 - 0.4
219,501 - 0.8
219,513 + 0.2
219,624 - 3.0
219,630 + 0.4
219,630 + 1.2
219,637 + -1.4
219,639 + -1.1
219,753 - -0.2
219,759 - -0.8
219,763 + -0.0
219,765 - -1.3
219,768 - -0.0
219,773 + 0.5
219,780 - -1.7
219,902 - 11428 mRNA_3060 0.13 1.0
219,902 - 11428 mRNA_3060 0.13 -1.0
219,903 + 11428 mRNA_3060 0.13 1.0
219,908 + 11428 mRNA_3060 0.13 0.9
219,931 + 11428 mRNA_3060 0.15 0.0
220,038 - 11428 mRNA_3060 0.21 -0.3
220,082 + 11428 mRNA_3060 0.24 1.1
220,477 - 11428 mRNA_3060 0.48 0.5
220,584 - 11428 mRNA_3060 0.55 0.6
220,591 + 11428 mRNA_3060 0.55 1.1
220,592 + 11428 mRNA_3060 0.55 1.8
220,599 - 11428 mRNA_3060 0.56 0.3
221,253 + -0.1
221,380 - -2.9
221,387 + 1.7
221,397 + -0.1
221,489 - 0.4
221,818 + 0.6
221,962 + -1.5
222,113 + 11429 mRNA_3061 0.10 -1.6
222,222 - 11429 mRNA_3061 0.14 0.4
222,241 - 11429 mRNA_3061 0.14 -1.1
222,268 - 11429 mRNA_3061 0.15 0.1