Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3057

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424 mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212271 to 214660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214961 to 216563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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211,331 + 11424 mRNA_3056 0.63 0.4
211,453 - 11424 mRNA_3056 0.72 0.9
211,457 + 11424 mRNA_3056 0.72 1.2
211,472 + 11424 mRNA_3056 0.73 -0.2
211,581 - 11424 mRNA_3056 0.81 2.0
211,599 - 11424 mRNA_3056 0.82 3.1
211,599 - 11424 mRNA_3056 0.82 -0.9
211,599 - 11424 mRNA_3056 0.82 -0.6
211,602 - 11424 mRNA_3056 0.82 0.8
211,766 - 1.8
211,769 + 0.1
211,892 + 0.8
211,898 - 0.5
211,902 + 0.6
211,903 - 2.7
211,920 + -0.1
211,928 + 2.5
211,929 + 0.7
212,035 - 0.7
212,045 - 0.1
212,054 + 0.4
212,059 + 0.9
212,211 - -0.4
212,224 + 0.4
212,226 + -0.0
212,274 - 3.0
212,332 + 0.4
212,334 + 0.3
212,336 - 1.6
212,336 - 0.5
212,339 - -1.2
212,361 + 0.6
212,494 + -0.9
212,506 - 1.5
212,604 - 11425 mRNA_3057 0.14 1.5
212,705 - 11425 mRNA_3057 0.18 1.9
212,748 + 11425 mRNA_3057 0.20 -0.2
212,802 + 11425 mRNA_3057 0.22 1.2
212,941 + 11425 mRNA_3057 0.28 -0.7
213,090 - 11425 mRNA_3057 0.34 0.0
213,116 - 11425 mRNA_3057 0.35 1.0
213,129 - 11425 mRNA_3057 0.36 0.3
213,470 + 11425 mRNA_3057 0.50 0.5
213,496 + 11425 mRNA_3057 0.51 -1.1
213,652 + 11425 mRNA_3057 0.58 0.7
213,782 - 11425 mRNA_3057 0.63 0.7
213,807 + 11425 mRNA_3057 0.64 0.7
213,813 - 11425 mRNA_3057 0.65 -2.0
213,814 - 11425 mRNA_3057 0.65 2.2
213,989 - 11425 mRNA_3057 0.72 1.4
213,994 + 11425 mRNA_3057 0.72 1.1
214,072 + 11425 mRNA_3057 0.75 0.9
214,224 - 11425 mRNA_3057 0.82 -0.8
214,238 - 11425 mRNA_3057 0.82 0.6
214,243 + 11425 mRNA_3057 0.83 0.9
214,523 + 0.2
214,665 + 3.3
214,696 + 1.0
214,932 + -0.6
214,987 + -0.5
214,988 + -1.3
215,019 + 0.4
215,262 - 11426 mRNA_3058 0.19 -0.3
215,363 - 11426 mRNA_3058 0.25 0.9
215,509 + 11426 mRNA_3058 0.34 0.5
215,589 - 11426 mRNA_3058 0.39 3.0
215,589 - 11426 mRNA_3058 0.39 2.3
215,589 - 11426 mRNA_3058 0.39 1.7
215,589 - 11426 mRNA_3058 0.39 -0.5
215,595 + 11426 mRNA_3058 0.40 1.9
215,643 + 11426 mRNA_3058 0.43 -0.0