Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3055

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422 mRNA_3055: 11423 - Hypothetical Protein, at 208583 to 210185 11423 mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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207,643 - 11422 mRNA_3054 0.82 0.8
207,643 - 11422 mRNA_3054 0.82 2.5
207,818 + -1.0
207,925 + 1.6
207,955 - 1.3
208,071 - 1.9
208,092 - -0.5
208,096 + 0.5
208,099 - 0.3
208,100 - -0.1
208,101 + -1.3
208,103 + 0.7
208,108 - -0.8
208,108 + 0.1
208,108 + -1.0
208,112 - 0.0
208,118 + -0.1
208,123 - -1.1
208,124 + 0.2
208,155 - 1.3
208,223 + 1.2
208,228 - 2.7
208,229 + -0.5
208,239 - 1.8
208,248 + 0.2
208,253 + 0.9
208,259 - -0.5
208,392 - -0.4
208,397 - 0.5
208,400 - 1.2
208,414 + 0.4
208,420 + -3.0
208,523 + 2.4
208,561 - -2.4
208,653 + -1.2
208,681 + 0.2
208,689 + -1.5
208,806 - 11423 mRNA_3055 0.14 0.4
208,834 - 11423 mRNA_3055 0.16 2.6
208,839 + 11423 mRNA_3055 0.16 -0.4
208,976 - 11423 mRNA_3055 0.25 -0.7
209,004 + 11423 mRNA_3055 0.26 0.5
209,114 + 11423 mRNA_3055 0.33 -0.3
209,404 - 11423 mRNA_3055 0.51 -0.2
209,458 - 11423 mRNA_3055 0.55 0.1
209,611 - 11423 mRNA_3055 0.64 0.4
209,839 + 11423 mRNA_3055 0.78 1.9
209,847 + 11423 mRNA_3055 0.79 1.5
210,000 - 11423 mRNA_3055 0.88 0.6
210,001 + 11423 mRNA_3055 0.88 -0.9
210,018 + 11423 mRNA_3055 0.90 0.7
210,149 + 1.6
210,189 - 0.5
210,307 - -0.3
210,320 + 2.9
210,333 + -0.1
210,347 + 0.5
210,410 + -1.7
210,500 + 0.3
210,618 + 11424 mRNA_3056 0.14 0.1
210,739 + 11424 mRNA_3056 0.23 -0.6
210,743 - 11424 mRNA_3056 0.23 1.4
210,774 - 11424 mRNA_3056 0.25 2.8
210,913 - 11424 mRNA_3056 0.35 1.0
210,984 + 11424 mRNA_3056 0.40 0.4
211,027 + 11424 mRNA_3056 0.43 1.0
211,181 + 11424 mRNA_3056 0.53 0.2