Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3053

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201580 to 204661 11420 mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205361 to 206848 11421 mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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204,386 - -0.4
204,389 - 0.3
204,390 + -0.9
204,393 - -2.0
204,396 + 2.8
204,398 - 1.2
204,399 - 1.4
204,404 - -0.4
204,411 + -0.2
204,411 - -0.0
204,412 + -0.0
204,412 - 0.8
204,427 - 0.3
204,428 + -1.5
204,436 - 1.4
204,438 - 0.5
204,463 + 0.6
204,479 + -1.0
204,531 - 0.1
204,534 - 3.2
204,544 - 0.6
204,547 + -0.2
204,553 - -0.7
204,575 - -0.2
204,692 + -0.5
204,728 + 1.6
204,868 + 0.8
204,881 - 0.8
204,890 + -0.4
204,900 + 0.3
204,904 + -0.1
204,998 + 0.5
205,022 - 0.7
205,028 - 1.7
205,028 - 0.4
205,029 + 0.6
205,043 - 2.1
205,047 + -0.4
205,047 + -0.0
205,050 - -0.8
205,051 - 0.4
205,054 + -1.3
205,056 + -0.4
205,057 - -0.6
205,062 + 2.2
205,067 + -1.5
205,068 + 0.6
205,068 + 1.6
205,068 + 0.2
205,070 + 0.0
205,070 + 1.4
205,076 + -0.4
205,077 + 0.2
205,081 + 2.2
205,088 - 1.0
205,091 + 1.1
205,091 - 1.7
205,094 + 0.6
205,104 - 0.4
205,104 + 2.0
205,136 - -0.5
205,144 + 2.0
205,147 - -0.0
205,157 - 2.2
205,158 - -0.8
205,159 - 0.7
205,163 - 0.6
205,269 - 0.7
205,285 - 0.2
205,310 - 1.3
205,312 - 1.8
205,326 - 0.3
205,329 - 0.5
205,330 + 0.4
205,589 - 11421 mRNA_3053 0.15 -0.9
205,592 - 11421 mRNA_3053 0.16 0.2
205,594 + 11421 mRNA_3053 0.16 1.3
205,595 + 11421 mRNA_3053 0.16 -0.8
205,597 + 11421 mRNA_3053 0.16 -0.4
205,612 + 11421 mRNA_3053 0.17 0.4
205,784 + 11421 mRNA_3053 0.28 1.7
205,904 - 11421 mRNA_3053 0.36 1.3
205,906 + 11421 mRNA_3053 0.37 -0.2
206,059 - 11421 mRNA_3053 0.47 0.3
206,140 + 11421 mRNA_3053 0.52 1.6
206,322 - 11421 mRNA_3053 0.65 1.1
206,341 + 11421 mRNA_3053 0.66 -0.4
206,477 - 11421 mRNA_3053 0.75 1.0
206,496 + 11421 mRNA_3053 0.76 1.5
206,612 + 11421 mRNA_3053 0.84 -0.2
206,617 - 11421 mRNA_3053 0.84 -0.0
206,718 + 0.4
206,769 - 0.0
206,907 - 0.4
206,912 - 1.3
206,922 + 1.8
206,931 - -0.1
206,938 - -0.3
206,957 + 1.2
206,961 - 0.4
206,971 - 3.5
207,041 - -0.7
207,148 + 0.1
207,238 - -0.7
207,382 + 11422 mRNA_3054 0.25 0.8
207,382 - 11422 mRNA_3054 0.25 0.4
207,643 - 11422 mRNA_3054 0.82 0.8
207,643 - 11422 mRNA_3054 0.82 2.5
207,818 + -1.0