Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3052

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3051: 11419 - Hypothetical Protein, at 198929 to 201085 11419 mRNA_3052: 11420 - KOG2404 Fumarate reductase, flavoprotein subunit, at 201580 to 204661 11420 mRNA_3053: 11421 - K06889 K06889 uncharacterized protein, at 205361 to 206848 11421

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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200,775 - 11419 mRNA_3051 0.86 2.1
201,924 + 11420 mRNA_3052 0.11 0.7
202,205 - 11420 mRNA_3052 0.20 0.6
202,319 + 11420 mRNA_3052 0.24 -2.0
202,536 - 11420 mRNA_3052 0.31 -0.0
202,544 + 11420 mRNA_3052 0.31 0.7
202,717 - 11420 mRNA_3052 0.37 0.3
202,811 - 11420 mRNA_3052 0.40 -0.7
202,954 - 11420 mRNA_3052 0.45 0.0
202,967 - 11420 mRNA_3052 0.45 -0.3
203,010 - 11420 mRNA_3052 0.46 0.1
203,090 - 11420 mRNA_3052 0.49 0.6
203,364 + 11420 mRNA_3052 0.58 0.3
203,854 - 11420 mRNA_3052 0.74 2.1
203,879 - 11420 mRNA_3052 0.75 -0.4
203,980 + 11420 mRNA_3052 0.78 2.0
203,993 + 11420 mRNA_3052 0.78 2.4
204,138 - 11420 mRNA_3052 0.83 0.5
204,225 + 11420 mRNA_3052 0.86 1.4
204,292 + 11420 mRNA_3052 0.88 0.3
204,330 + 11420 mRNA_3052 0.89 0.0
204,335 + 11420 mRNA_3052 0.89 2.1
204,341 + 11420 mRNA_3052 0.90 0.7
204,346 + 11420 mRNA_3052 0.90 -1.4
204,386 - -0.4
204,389 - 0.3
204,390 + -0.9
204,393 - -2.0
204,396 + 2.8
204,398 - 1.2
204,399 - 1.4
204,404 - -0.4
204,411 + -0.2
204,411 - -0.0
204,412 + -0.0
204,412 - 0.8
204,427 - 0.3
204,428 + -1.5
204,436 - 1.4
204,438 - 0.5
204,463 + 0.6
204,479 + -1.0
204,531 - 0.1
204,534 - 3.2
204,544 - 0.6
204,547 + -0.2
204,553 - -0.7
204,575 - -0.2
204,692 + -0.5
204,728 + 1.6
204,868 + 0.8
204,881 - 0.8
204,890 + -0.4
204,900 + 0.3
204,904 + -0.1
204,998 + 0.5
205,022 - 0.7
205,028 - 1.7
205,028 - 0.4
205,029 + 0.6
205,043 - 2.1
205,047 + -0.4
205,047 + -0.0
205,050 - -0.8
205,051 - 0.4
205,054 + -1.3
205,056 + -0.4
205,057 - -0.6
205,062 + 2.2
205,067 + -1.5
205,068 + 0.6
205,068 + 1.6
205,068 + 0.2
205,070 + 0.0
205,070 + 1.4
205,076 + -0.4
205,077 + 0.2
205,081 + 2.2
205,088 - 1.0
205,091 + 1.1
205,091 - 1.7
205,094 + 0.6
205,104 - 0.4
205,104 + 2.0
205,136 - -0.5
205,144 + 2.0
205,147 - -0.0
205,157 - 2.2
205,158 - -0.8
205,159 - 0.7
205,163 - 0.6
205,269 - 0.7
205,285 - 0.2
205,310 - 1.3
205,312 - 1.8
205,326 - 0.3
205,329 - 0.5
205,330 + 0.4
205,589 - 11421 mRNA_3053 0.15 -0.9
205,592 - 11421 mRNA_3053 0.16 0.2
205,594 + 11421 mRNA_3053 0.16 1.3
205,595 + 11421 mRNA_3053 0.16 -0.8
205,597 + 11421 mRNA_3053 0.16 -0.4
205,612 + 11421 mRNA_3053 0.17 0.4