Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3042

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3042: 11410 - KOG0252 Inorganic phosphate transporter, at 172633 to 175207 11410 mRNA_3043: 11411 - K18159 NDUFAF1, CIA30 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1, at 175511 to 176675 11411

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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171,789 + 0.0
172,176 + -0.6
172,400 - 0.7
172,670 + -0.3
172,698 - 2.0
172,741 + 0.4
173,232 + 11410 mRNA_3042 0.23 0.6
173,293 - 11410 mRNA_3042 0.26 -1.8
173,304 - 11410 mRNA_3042 0.26 -1.3
173,306 + 11410 mRNA_3042 0.26 1.3
173,324 - 11410 mRNA_3042 0.27 0.4
173,420 + 11410 mRNA_3042 0.31 -1.5
173,429 - 11410 mRNA_3042 0.31 -0.7
173,905 - 11410 mRNA_3042 0.49 0.7
173,928 - 11410 mRNA_3042 0.50 -0.5
174,171 + 11410 mRNA_3042 0.60 1.6
175,031 + 0.3
175,070 + 0.7
175,347 + 0.3
175,457 - -0.3
175,462 - 0.0
175,468 - 0.4
175,491 - -0.8