Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3033

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3032: 11400 - K09489 HSPA4 heat shock 70kDa protein 4, at 140473 to 143328 11400 mRNA_3033: 11401 - BLAST related to transcription factor medusa [Melanopsichiu..., at 143853 to 146672 11401

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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143,385 - 2.0
143,400 + 0.6
143,402 - -2.4
143,503 - -0.3
143,514 - 1.2
143,514 - 1.6
143,526 + -1.0
143,528 + 0.4
143,535 + 2.2
143,689 + 0.9
143,696 + 0.7
143,712 - -0.5
143,853 + -0.1
143,905 + -0.8
143,983 - 0.0
143,997 - -0.7
144,100 - 0.9
144,253 - 11401 mRNA_3033 0.14 -0.1
144,460 + 11401 mRNA_3033 0.22 0.3
144,556 + 11401 mRNA_3033 0.25 0.5
144,689 - 11401 mRNA_3033 0.30 0.8
144,737 + 11401 mRNA_3033 0.31 0.8
144,819 - 11401 mRNA_3033 0.34 0.4
145,046 + 11401 mRNA_3033 0.42 0.5
145,146 + 11401 mRNA_3033 0.46 -0.1
145,430 + 11401 mRNA_3033 0.56 0.4
145,728 - 11401 mRNA_3033 0.66 -0.7
145,912 - 11401 mRNA_3033 0.73 2.6
146,010 - 11401 mRNA_3033 0.76 0.4
146,164 + 11401 mRNA_3033 0.82 -2.5
146,169 - 11401 mRNA_3033 0.82 2.8
146,173 - 11401 mRNA_3033 0.82 -0.4
146,333 - 11401 mRNA_3033 0.88 0.3
146,367 + 11401 mRNA_3033 0.89 0.9
146,453 - 1.0
146,481 + 0.3
146,482 + 0.6
146,496 - 1.5
146,638 - -0.1
146,715 + 0.0
146,757 - 0.4
146,776 + 0.6
146,902 - -1.4
146,910 - -0.2
146,915 - -0.9
146,924 - 1.7
146,927 + 2.6
146,931 + 1.4
146,958 + -0.4
147,063 + -0.1
147,070 - -0.1
147,079 - 2.5
147,080 + 0.5
147,081 + 2.7
147,083 - -0.7
147,084 + 0.4
147,084 - 0.6
147,086 - -0.5
147,089 - 1.9
147,094 - 0.1
147,098 - -0.4
147,099 + -2.0
147,101 - 2.3
147,101 - 0.2
147,102 - 0.3
147,103 + -1.8
147,103 - 0.9
147,104 + 1.3
147,105 + 3.6
147,105 - 0.1
147,105 + 3.2
147,106 + 0.9
147,107 + 0.1
147,108 + -0.6
147,108 - -0.2
147,117 - 0.2
147,118 + 1.8
147,121 - 1.1
147,121 - -0.2
147,121 - -1.1
147,124 + 1.3
147,125 + 0.3
147,125 + -1.5
147,127 - 3.1
147,130 + -0.3
147,139 - 0.6
147,139 - 0.1
147,140 + -0.1
147,140 - 0.3
147,141 - 0.7
147,142 + 1.2
147,143 - -0.2
147,161 - 2.1
147,162 - 0.5
147,164 - 0.8
147,168 + 1.1
147,176 + -0.1
147,195 + -2.6
147,209 - 1.4
147,224 + 0.1
147,246 - 0.2
147,249 - 1.6
147,258 + -0.7
147,289 - 0.2
147,341 - 0.1
147,346 + 0.2
147,346 + -0.7
147,350 - 1.7
147,355 + -1.4
147,356 - 1.0
147,356 - 0.6
147,359 - 3.6
147,359 - -2.5
147,359 + -0.2
147,360 - 0.2
147,360 - 1.8
147,367 - 1.3
147,371 + -0.5
147,379 - -0.5
147,381 - -1.1
147,383 - 0.7
147,384 - 1.4
147,385 - 0.5
147,413 - 2.6
147,524 - -0.5