Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3030

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134923 to 137066 11397 mRNA_3030: 11398 - Hypothetical Protein, at 137392 to 137958 11398 mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138430 to 140039 11399

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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136,530 - 11397 mRNA_3029 0.75 -0.9
136,541 + 11397 mRNA_3029 0.75 -2.2
136,674 + 11397 mRNA_3029 0.82 0.1
136,697 + 11397 mRNA_3029 0.83 -0.4
136,822 + 11397 mRNA_3029 0.89 1.2
136,965 - -0.1
136,983 - 0.8
137,111 + 1.8
137,122 + 0.2
137,123 + -1.0
137,123 - -0.1
137,135 - -0.9
137,142 + 0.3
137,146 + -0.9
137,147 + -0.4
137,279 - 0.1
137,298 - 0.2
137,304 + 0.2
137,325 - 0.9
137,420 - 0.3
137,429 + -0.0
137,467 - 11398 mRNA_3030 0.13 -1.8
137,521 - 11398 mRNA_3030 0.23 0.7
137,566 - 11398 mRNA_3030 0.31 -1.7
137,864 - 11398 mRNA_3030 0.83 -2.6
137,872 - 11398 mRNA_3030 0.85 2.1
137,882 - 11398 mRNA_3030 0.86 -1.3
137,918 + 0.4
138,012 - -0.2