Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3009

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3008: 11376 - HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799, at 60118 to 65560 11376 mRNA_3009: 11377 - Hypothetical Protein, at 65747 to 66498 11377 mRNA_3010: 11378 - K10398 KIF11, EG5 kinesin family member 11, at 66880 to 69062 11378

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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64,977 + 11376 mRNA_3008 0.89 0.8
65,134 + 1.7
65,145 + -0.0
65,154 - -3.3
65,160 + -0.4
65,185 + -3.0
65,286 - 1.3
65,300 - -1.6
65,314 + -0.1
65,329 - 1.9
65,408 + 1.4
65,414 - -0.7
65,457 - 1.1
65,466 - 0.4
65,570 + 3.6
65,591 + 1.8
65,595 + -0.8
65,601 + -0.0
65,620 + -0.4
65,727 - 0.3
65,758 + 0.8
65,912 - 11377 mRNA_3009 0.22 -0.5
65,913 + 11377 mRNA_3009 0.22 0.5
65,914 + 11377 mRNA_3009 0.22 -1.0
65,918 + 11377 mRNA_3009 0.23 -0.0
65,939 - 11377 mRNA_3009 0.26 -1.0
65,941 + 11377 mRNA_3009 0.26 -1.2
66,007 + 11377 mRNA_3009 0.35 -1.1
66,015 - 11377 mRNA_3009 0.36 1.4
66,018 + 11377 mRNA_3009 0.36 0.2
66,033 + 11377 mRNA_3009 0.38 -0.6
66,052 - 11377 mRNA_3009 0.41 0.1
66,073 - 11377 mRNA_3009 0.43 0.1
66,077 - 11377 mRNA_3009 0.44 -0.4
66,335 - 11377 mRNA_3009 0.78 0.8
66,651 - -1.1
66,782 - -0.2
66,813 + 2.1
66,820 + 0.3
66,821 - 1.9
66,825 - -2.3
66,829 - 1.7
66,834 + -0.5
66,834 - -0.4
66,834 - 0.6
66,835 + 0.0
66,839 - -0.1
66,840 + -0.8
66,841 + -1.7
66,843 + -1.4
66,851 + -0.9
66,852 - -2.2
66,852 - -0.5
66,977 + 0.6
66,981 + 1.2
66,983 + 2.5
66,992 - 1.9
66,993 + 0.7
67,169 + 11378 mRNA_3010 0.13 2.2
67,171 - 11378 mRNA_3010 0.13 2.3
67,172 - 11378 mRNA_3010 0.13 -0.4
67,427 + 11378 mRNA_3010 0.25 1.6
67,431 + 11378 mRNA_3010 0.25 -0.1