Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3000

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2999: 11367 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 43195 to 45486 11367 mRNA_3000: 11368 - K15528 FAAH fatty acid amide hydrolase, at 45858 to 47909 11368 mRNA_3001: 11369 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 48202 to 49332 11369

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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44,878 + 11367 mRNA_2999 0.73 1.0
44,989 - 11367 mRNA_2999 0.78 -1.4
44,992 + 11367 mRNA_2999 0.78 1.0
45,001 + 11367 mRNA_2999 0.79 -1.7
45,367 + 2.0
45,429 - 0.0
45,519 + 1.3
45,694 + -0.5
45,700 - 0.8
45,708 - -2.5
45,708 + 0.6
45,711 - 2.1
45,715 + 0.1
45,723 - -0.4
45,729 + -0.5
45,815 - -0.7
45,964 - -0.1
46,145 + 11368 mRNA_3000 0.14 0.1
46,154 + 11368 mRNA_3000 0.14 0.7
46,156 + 11368 mRNA_3000 0.15 -0.9
46,174 + 11368 mRNA_3000 0.15 0.5
46,179 + 11368 mRNA_3000 0.16 0.1
46,350 - 11368 mRNA_3000 0.24 0.6
46,457 - 11368 mRNA_3000 0.29 0.4
46,473 - 11368 mRNA_3000 0.30 -0.1
46,707 + 11368 mRNA_3000 0.41 -2.0
46,761 + 11368 mRNA_3000 0.44 -1.4
47,015 + 11368 mRNA_3000 0.56 -1.1
47,018 - 11368 mRNA_3000 0.57 -1.2
47,046 + 11368 mRNA_3000 0.58 0.5
47,064 + 11368 mRNA_3000 0.59 0.9
47,144 + 11368 mRNA_3000 0.63 2.1
47,168 - 11368 mRNA_3000 0.64 1.7
47,188 - 11368 mRNA_3000 0.65 2.3
47,244 - 11368 mRNA_3000 0.68 1.3
47,246 + 11368 mRNA_3000 0.68 2.2
47,362 + 11368 mRNA_3000 0.73 -0.2
47,437 + 11368 mRNA_3000 0.77 0.8
47,506 + 11368 mRNA_3000 0.80 2.7
47,598 - 11368 mRNA_3000 0.85 -2.2
47,608 + 11368 mRNA_3000 0.85 0.1
47,655 - 11368 mRNA_3000 0.88 -0.5
47,730 - 2.3
47,739 + -0.3
47,759 - 0.5
47,867 + -0.4
47,901 + -0.1
47,963 + -0.1
48,035 + -2.1
48,037 - 0.5
48,037 - -0.0
48,062 - -1.3
48,075 - 1.0
48,084 - -0.7
48,085 + -0.1
48,197 - -0.3
48,226 - 0.7
48,227 + 0.8
48,284 + 0.3
48,355 - 11369 mRNA_3001 0.14 2.4
48,381 - 11369 mRNA_3001 0.16 0.7
48,387 + 11369 mRNA_3001 0.16 -1.4
48,388 - 11369 mRNA_3001 0.16 -0.6
48,405 - 11369 mRNA_3001 0.18 0.9
48,405 + 11369 mRNA_3001 0.18 -0.1
48,412 + 11369 mRNA_3001 0.19 -0.9
48,414 - 11369 mRNA_3001 0.19 0.4
48,418 + 11369 mRNA_3001 0.19 2.1
48,434 + 11369 mRNA_3001 0.21 -0.6
48,489 + 11369 mRNA_3001 0.25 0.1
48,497 - 11369 mRNA_3001 0.26 -0.1
48,617 + 11369 mRNA_3001 0.37 -1.2
48,686 + 11369 mRNA_3001 0.43 3.2
48,690 - 11369 mRNA_3001 0.43 0.5
48,778 - 11369 mRNA_3001 0.51 -1.1