Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2995

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30118 to 34295 11362 mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34550 to 37704 11363 mRNA_2996: 11364 - Hypothetical Protein, at 37820 to 39043 11364

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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33,554 + 11362 mRNA_2994 0.82 0.5
33,814 + 11362 mRNA_2994 0.88 -0.3
33,902 - 0.0
34,049 - 0.4
34,167 - 2.3
34,189 + 1.5
34,208 + -1.3
34,212 - 0.9
34,217 + -1.5
34,220 + 0.7
34,352 + -0.2
34,355 - 0.4
34,358 + -0.1
34,364 - 2.2
34,371 - -0.4
34,377 + 0.9
34,384 + -0.4
34,387 - -0.2
34,402 + 0.1
34,408 - 2.3
34,421 + 0.3
34,431 + 1.2
34,648 + 0.6
34,697 + -0.3
34,697 + 0.7
35,117 - 11363 mRNA_2995 0.18 1.4
35,245 - 11363 mRNA_2995 0.22 0.1
35,247 - 11363 mRNA_2995 0.22 2.1
35,579 - 11363 mRNA_2995 0.33 0.6
35,693 - 11363 mRNA_2995 0.36 0.2
35,751 - 11363 mRNA_2995 0.38 -0.4
36,003 + 11363 mRNA_2995 0.46 -0.4
36,165 + 11363 mRNA_2995 0.51 1.2
36,261 + 11363 mRNA_2995 0.54 0.8
36,278 - 11363 mRNA_2995 0.55 3.5
36,410 - 11363 mRNA_2995 0.59 0.8
36,440 - 11363 mRNA_2995 0.60 0.2
36,612 - 11363 mRNA_2995 0.65 0.7
36,682 + 11363 mRNA_2995 0.68 1.0
36,683 - 11363 mRNA_2995 0.68 2.8
36,808 + 11363 mRNA_2995 0.72 -0.6
36,821 + 11363 mRNA_2995 0.72 0.1
36,821 + 11363 mRNA_2995 0.72 -1.3
36,825 - 11363 mRNA_2995 0.72 0.5
36,856 - 11363 mRNA_2995 0.73 -0.7
37,048 - 11363 mRNA_2995 0.79 1.2
37,381 + 11363 mRNA_2995 0.90 0.6
37,649 + -0.4
37,733 - 0.0
37,778 - -2.0