Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2990

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2989: 11357 - SUPERFAMILY--SSF103473, at 19979 to 21478 11357 mRNA_2990: 11358 - SUPERFAMILY--SSF52047, at 21801 to 25370 11358 mRNA_2991: 11359 - SUPERFAMILY--SSF50685, at 25748 to 27268 11359

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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20,859 - 11357 mRNA_2989 0.59 0.7
20,903 + 11357 mRNA_2989 0.62 0.6
20,914 + 11357 mRNA_2989 0.62 -0.4
21,059 - 11357 mRNA_2989 0.72 1.4
21,110 + 11357 mRNA_2989 0.75 0.2
21,159 + 11357 mRNA_2989 0.79 2.1
21,205 - 11357 mRNA_2989 0.82 0.3
21,205 + 11357 mRNA_2989 0.82 0.3
21,224 + 11357 mRNA_2989 0.83 1.1
21,352 - -1.7
21,399 + 0.9
21,484 + 2.1
21,595 - -3.6
21,605 + -1.9
21,679 + -1.2
21,756 - 1.0
22,179 + 11358 mRNA_2990 0.11 0.2
22,659 - 11358 mRNA_2990 0.24 -1.4
22,668 + 11358 mRNA_2990 0.24 0.7
23,235 - 11358 mRNA_2990 0.40 0.0
24,298 - 11358 mRNA_2990 0.70 -0.5
24,705 + 11358 mRNA_2990 0.81 -0.8
25,089 + 1.0
25,386 - 0.4
25,389 - -1.5
25,415 - 0.7
25,430 + -2.1
25,430 + -0.1
25,547 - -0.8
25,560 - -0.6
25,564 - -0.0
25,565 + -1.3
25,569 - 1.9
25,582 + 1.8
25,587 - -2.0
25,588 + 0.2
25,889 - 1.9
26,023 + 11359 mRNA_2991 0.18 0.2
26,023 + 11359 mRNA_2991 0.18 -0.8
26,148 - 11359 mRNA_2991 0.26 0.2
26,279 - 11359 mRNA_2991 0.35 -0.7
26,297 + 11359 mRNA_2991 0.36 4.1