Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2987

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2986: 11354 - K19176 FAAH2 fatty acid amide hydrolase 2, at 14214 to 16255 11354 mRNA_2987: 11355 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 16356 to 17605 11355 mRNA_2988: 11356 - KOG1212 Amidases, at 17852 to 19907 11356

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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15,407 + 11354 mRNA_2986 0.58 -0.0
15,452 + 11354 mRNA_2986 0.61 -0.7
15,471 - 11354 mRNA_2986 0.62 0.2
15,479 + 11354 mRNA_2986 0.62 -0.3
15,544 + 11354 mRNA_2986 0.65 2.0
16,047 - 11354 mRNA_2986 0.90 1.0
16,304 - 0.9
16,313 + 1.8
16,325 - 0.9
16,332 - 1.9
16,336 - 0.8
16,345 - 1.2
16,371 + 1.9
16,392 + 0.3
16,407 - -1.0
16,417 - 0.3
16,418 + -0.0
16,420 + 1.0
16,475 + -0.2
16,479 + 0.0
16,488 - 11355 mRNA_2987 0.11 -0.2
16,520 - 11355 mRNA_2987 0.13 1.1
16,530 - 11355 mRNA_2987 0.14 -0.3
16,605 - 11355 mRNA_2987 0.20 -0.4
16,617 + 11355 mRNA_2987 0.21 0.5
16,627 - 11355 mRNA_2987 0.22 0.3
16,630 - 11355 mRNA_2987 0.22 2.8
16,631 - 11355 mRNA_2987 0.22 -0.4
16,647 + 11355 mRNA_2987 0.23 0.2
16,650 - 11355 mRNA_2987 0.24 -0.5
16,778 + 11355 mRNA_2987 0.34 -0.0
16,798 + 11355 mRNA_2987 0.35 0.9
16,807 - 11355 mRNA_2987 0.36 1.2
16,809 + 11355 mRNA_2987 0.36 0.7
16,814 + 11355 mRNA_2987 0.37 1.7
16,822 + 11355 mRNA_2987 0.37 2.4
16,877 + 11355 mRNA_2987 0.42 1.7
17,017 - 11355 mRNA_2987 0.53 0.3
17,053 - 11355 mRNA_2987 0.56 -0.2
17,097 + 11355 mRNA_2987 0.59 0.2
17,100 - 11355 mRNA_2987 0.60 -0.4
17,241 + 11355 mRNA_2987 0.71 1.1
17,358 - 11355 mRNA_2987 0.80 1.4
17,483 - -0.1
17,491 - 0.8
17,515 - -0.7
17,546 + 0.5
17,562 + 1.4
17,639 - -0.1
17,641 - 0.3
17,667 + -0.9
17,694 - 0.0
17,832 + 1.9
17,919 - -1.0
17,937 + -0.9
18,027 - -1.5
18,091 + 11356 mRNA_2988 0.12 0.2
18,144 + 11356 mRNA_2988 0.14 0.2
18,200 - 11356 mRNA_2988 0.17 0.8
18,227 + 11356 mRNA_2988 0.18 1.8
18,253 - 11356 mRNA_2988 0.20 1.4
18,260 - 11356 mRNA_2988 0.20 -0.4
18,415 - 11356 mRNA_2988 0.27 0.7
18,576 - 11356 mRNA_2988 0.35 1.5