Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2984

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2983: 11351 - K00993 EPT1 ethanolaminephosphotransferase, at 8891 to 11294 11351 mRNA_2984: 11352 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 11630 to 12169 11352 mRNA_2985: 11353 - KOG1203 Predicted dehydrogenase, at 12654 to 13709 11353

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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10,855 + 11351 mRNA_2983 0.82 1.1
10,900 + 11351 mRNA_2983 0.84 0.6
10,903 - 11351 mRNA_2983 0.84 -1.3
11,013 - 11351 mRNA_2983 0.88 0.2
11,029 - 11351 mRNA_2983 0.89 1.8
11,036 + 11351 mRNA_2983 0.89 -1.4
11,135 + -0.1
11,292 - 0.9
11,307 + -0.3
11,366 + -1.0
11,438 - 0.2
11,450 + -0.3
11,450 + 0.6
11,572 + -0.2
11,581 + 0.2
11,581 + -1.5
11,582 - 0.8
11,598 - 1.7
11,602 - 0.9
11,734 + 11352 mRNA_2984 0.19 0.3
11,751 + 11352 mRNA_2984 0.22 0.8
11,936 + 11352 mRNA_2984 0.57 -0.5
11,936 + 11352 mRNA_2984 0.57 1.7
12,002 - 11352 mRNA_2984 0.69 0.7
12,011 + 11352 mRNA_2984 0.71 0.5
12,011 + 11352 mRNA_2984 0.71 1.3
12,042 - 11352 mRNA_2984 0.76 2.4
12,156 + 1.6
12,174 + -0.1
12,177 - -1.0
12,481 + 3.5
12,767 + 11353 mRNA_2985 0.11 1.2
12,773 - 11353 mRNA_2985 0.11 0.5
12,800 + 11353 mRNA_2985 0.14 0.2
12,938 + 11353 mRNA_2985 0.27 1.2
13,160 - 11353 mRNA_2985 0.48 0.7