Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2980

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2980: 11348 - KOG3140 Predicted membrane protein, at 23 to 1444 11348

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + 0.6
1 + 0.4
1 + -0.6
21 + 3.0
21 + 1.6
21 + -0.1
41 + 0.5
42 + -0.5
44 + 1.3
79 - 0.3
79 + 0.6
149 - -0.0
264 + 11348 mRNA_2980 0.17 1.6
266 - 11348 mRNA_2980 0.17 0.2
338 - 11348 mRNA_2980 0.22 0.7
341 + 11348 mRNA_2980 0.22 0.3
454 - 11348 mRNA_2980 0.30 1.3
484 - 11348 mRNA_2980 0.32 0.4
489 - 11348 mRNA_2980 0.33 1.7
491 + 11348 mRNA_2980 0.33 -0.0
507 + 11348 mRNA_2980 0.34 -0.3
510 + 11348 mRNA_2980 0.34 0.5
516 - 11348 mRNA_2980 0.35 0.6
654 + 11348 mRNA_2980 0.44 1.5
719 + 11348 mRNA_2980 0.49 1.6
1,007 + 11348 mRNA_2980 0.69 0.1
1,048 - 11348 mRNA_2980 0.72 -1.4
1,218 - 11348 mRNA_2980 0.84 -0.3
1,248 + 11348 mRNA_2980 0.86 1.2
1,364 + -1.1
1,374 - 1.1
1,401 + 1.9
1,452 + 0.4
1,488 - 1.1
1,503 + 0.9
1,513 + -0.6
1,515 - 2.3
1,551 + 1.4
1,634 + 1.6
1,635 + -0.7
1,657 + 0.9
1,668 + 1.5
1,805 - 1.5
1,805 + 0.6
1,818 + 0.3
1,882 + 0.2
1,934 + 0.2
1,948 + 0.2
1,949 - 0.9
1,974 + 0.6
1,992 + 1.3
1,992 + -0.4
1,993 + 1.1
2,011 + 0.0
2,082 + 0.4
2,084 - 0.1
2,086 + 1.4
2,086 + 0.2
2,086 + 0.1
2,095 + -0.0
2,097 - 0.3
2,098 + 0.5
2,115 + 1.9
2,117 + 0.9
2,120 + -0.1
2,121 - 1.1
2,121 - -1.0
2,125 - 1.2
2,126 + 1.7
2,131 + -0.1
2,131 + 0.2
2,131 + 0.7
2,133 + 0.3
2,243 + 0.9
2,265 + 0.5
2,301 + 2.2
2,320 + -0.4
2,324 - 0.1
2,357 + 1.3