Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2978

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697458 to 698969 11345 mRNA_2978: 11346 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 699095 to 700907 11346 mRNA_2979: 11347 - Hypothetical Protein, at 700904 to 702212 11347

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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699,011 + -1.7
699,167 + -0.1
699,187 + -0.4
699,300 - 11346 mRNA_2978 0.11 0.0
699,305 - 11346 mRNA_2978 0.12 1.1
699,305 - 11346 mRNA_2978 0.12 -0.1
699,342 - 11346 mRNA_2978 0.14 0.5
699,375 + 11346 mRNA_2978 0.15 -0.3
699,460 - 11346 mRNA_2978 0.20 1.7
699,478 - 11346 mRNA_2978 0.21 -0.5
699,481 - 11346 mRNA_2978 0.21 -2.1
699,487 + 11346 mRNA_2978 0.22 0.7
699,617 - 11346 mRNA_2978 0.29 -0.3
699,804 - 11346 mRNA_2978 0.39 0.6
699,822 - 11346 mRNA_2978 0.40 -1.0
700,062 + 11346 mRNA_2978 0.53 1.5
700,083 + 11346 mRNA_2978 0.54 0.6
700,299 + 11346 mRNA_2978 0.66 -0.7
700,398 + 11346 mRNA_2978 0.72 -0.9
700,469 - 11346 mRNA_2978 0.76 1.1
700,470 - 11346 mRNA_2978 0.76 0.9
700,470 - 11346 mRNA_2978 0.76 -0.7
700,478 - 11346 mRNA_2978 0.76 -0.7
700,581 - 11346 mRNA_2978 0.82 0.2
700,607 - 11346 mRNA_2978 0.83 1.5
700,611 + 11346 mRNA_2978 0.84 1.0
700,611 + 11346 mRNA_2978 0.84 0.3
700,619 - 11346 mRNA_2978 0.84 0.2
700,800 - 2.1
700,827 + 1.8
700,907 + 2.5
700,908 + -0.7
700,922 + -0.0
700,924 - 1.5
701,072 - 11347 mRNA_2979 0.13 -0.8
701,222 + 11347 mRNA_2979 0.24 1.9
701,276 - 11347 mRNA_2979 0.28 1.3
701,406 + 11347 mRNA_2979 0.38 -0.0
701,457 - 11347 mRNA_2979 0.42 0.1
701,468 - 11347 mRNA_2979 0.43 0.3
701,468 - 11347 mRNA_2979 0.43 -1.2
701,471 - 11347 mRNA_2979 0.43 0.4
701,503 - 11347 mRNA_2979 0.46 -0.9
701,511 - 11347 mRNA_2979 0.46 3.2
701,517 + 11347 mRNA_2979 0.47 -0.0
701,517 - 11347 mRNA_2979 0.47 0.8
701,597 - 11347 mRNA_2979 0.53 -0.3
701,602 - 11347 mRNA_2979 0.53 1.1
701,617 + 11347 mRNA_2979 0.54 2.4
701,656 - 11347 mRNA_2979 0.57 0.7
701,665 - 11347 mRNA_2979 0.58 2.3
701,668 - 11347 mRNA_2979 0.58 -2.4
701,697 - 11347 mRNA_2979 0.61 2.6
701,738 - 11347 mRNA_2979 0.64 0.8
701,765 - 11347 mRNA_2979 0.66 0.9
701,822 - 11347 mRNA_2979 0.70 -0.5
701,823 - 11347 mRNA_2979 0.70 -0.7
701,871 - 11347 mRNA_2979 0.74 -0.1
701,892 + 11347 mRNA_2979 0.75 0.6
701,906 - 11347 mRNA_2979 0.77 -1.4