Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2971

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682650 to 684031 11338 mRNA_2971: 11339 - HMMPfam-Anp1-PF03452,SUPERFAMILY--SSF53448, at 684112 to 685866 11339 mRNA_2972: 11340 - K03850 ALG10 alpha-1,2-glucosyltransferase, at 686136 to 688131 11340

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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683,199 - 11338 mRNA_2970 0.40 4.1
683,290 + 11338 mRNA_2970 0.46 0.1
683,293 - 11338 mRNA_2970 0.47 0.7
683,302 + 11338 mRNA_2970 0.47 -1.4
683,322 - 11338 mRNA_2970 0.49 0.1
683,407 - 11338 mRNA_2970 0.55 0.6
683,407 - 11338 mRNA_2970 0.55 1.5
683,408 - 11338 mRNA_2970 0.55 -0.3
683,421 + 11338 mRNA_2970 0.56 -0.4
683,429 - 11338 mRNA_2970 0.56 1.3
683,595 - 11338 mRNA_2970 0.68 0.6
683,752 + 11338 mRNA_2970 0.80 -0.1
683,787 + 11338 mRNA_2970 0.82 1.1
683,795 - 11338 mRNA_2970 0.83 0.6
683,798 + 11338 mRNA_2970 0.83 -0.5
683,844 - 11338 mRNA_2970 0.86 -0.1
683,862 + 11338 mRNA_2970 0.88 3.1
683,865 - 11338 mRNA_2970 0.88 2.4
683,896 - -1.2
684,027 - 0.2
684,083 + 0.4
684,294 - 11339 mRNA_2971 0.10 0.3
684,354 + 11339 mRNA_2971 0.14 -0.2
684,498 + 11339 mRNA_2971 0.22 1.1
684,604 + 11339 mRNA_2971 0.28 -0.1
684,633 + 11339 mRNA_2971 0.30 0.2
684,642 - 11339 mRNA_2971 0.30 -1.0
684,653 - 11339 mRNA_2971 0.31 0.0
684,673 + 11339 mRNA_2971 0.32 -1.1
684,778 + 11339 mRNA_2971 0.38 0.3
684,788 - 11339 mRNA_2971 0.39 0.7
684,816 - 11339 mRNA_2971 0.40 -1.7
684,816 - 11339 mRNA_2971 0.40 1.3
684,819 + 11339 mRNA_2971 0.40 -2.2
684,926 + 11339 mRNA_2971 0.46 0.0
684,968 - 11339 mRNA_2971 0.49 0.7
685,026 - 11339 mRNA_2971 0.52 2.2
685,026 - 11339 mRNA_2971 0.52 0.5
685,029 - 11339 mRNA_2971 0.52 0.7
685,174 - 11339 mRNA_2971 0.61 -1.5
685,357 - 11339 mRNA_2971 0.71 1.8
685,368 + 11339 mRNA_2971 0.72 -0.8
685,374 - 11339 mRNA_2971 0.72 -2.1
685,392 + 11339 mRNA_2971 0.73 2.6
685,496 - 11339 mRNA_2971 0.79 1.0
685,536 + 11339 mRNA_2971 0.81 0.6
685,597 + 11339 mRNA_2971 0.85 2.4
685,598 + 11339 mRNA_2971 0.85 -0.1
685,599 - 11339 mRNA_2971 0.85 1.0
685,601 - 11339 mRNA_2971 0.85 0.6
685,601 - 11339 mRNA_2971 0.85 0.2
685,641 - 11339 mRNA_2971 0.87 -0.9
685,687 - 11339 mRNA_2971 0.90 -1.0
685,688 - 11339 mRNA_2971 0.90 -0.0
685,697 - 0.3
685,756 - 1.7
685,778 + 0.7
685,785 + -0.6
685,801 - -1.3
685,812 + 1.3
685,854 + 0.8
685,905 - 1.1
685,958 + 0.7
685,967 + 0.5
685,974 - 2.8
686,118 - 1.8
686,119 - -0.6
686,164 + 1.3
686,164 + -0.4
686,218 - -0.8
686,221 - 1.2
686,281 - 2.6
686,286 + 0.5
686,460 + 11340 mRNA_2972 0.16 1.5
686,503 - 11340 mRNA_2972 0.18 -1.3
686,542 + 11340 mRNA_2972 0.20 0.5
686,744 - 11340 mRNA_2972 0.30 -1.2