Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2967

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2966: 11334 - KOG3238 Chloride ion current inducer protein, at 669918 to 671056 11334 mRNA_2967: 11335 - Hypothetical Protein, at 671807 to 673227 11335 mRNA_2968: 11336 - Hypothetical Protein, at 673383 to 681780 11336

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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670,994 + 0.6
671,084 + 0.3
671,169 + -0.2
671,172 - 1.0
671,172 - 0.3
671,174 + 4.6
671,176 - -0.4
671,178 + 2.3
671,281 + 2.2
671,288 - -0.5
671,600 - 0.9
671,708 - 0.4
671,735 + 0.4
671,738 - -0.4
671,748 + -0.4
671,845 + -0.2
671,893 + 2.6
671,901 + 0.4
671,901 + 0.9
671,902 + 0.1
671,999 + 11335 mRNA_2967 0.14 0.7
672,000 - 11335 mRNA_2967 0.14 -0.9
672,010 + 11335 mRNA_2967 0.14 0.3
672,049 - 11335 mRNA_2967 0.17 0.1
672,053 - 11335 mRNA_2967 0.17 0.1
672,056 - 11335 mRNA_2967 0.18 2.1
672,130 - 11335 mRNA_2967 0.23 1.0
672,209 - 11335 mRNA_2967 0.28 1.2
672,227 - 11335 mRNA_2967 0.30 -1.4
672,275 + 11335 mRNA_2967 0.33 2.2
672,281 + 11335 mRNA_2967 0.33 -1.2
672,292 + 11335 mRNA_2967 0.34 1.3
672,432 - 11335 mRNA_2967 0.44 -0.1
672,440 + 11335 mRNA_2967 0.45 0.7
672,457 - 11335 mRNA_2967 0.46 -0.2
672,563 - 11335 mRNA_2967 0.53 1.4
672,594 + 11335 mRNA_2967 0.55 1.4
672,627 + 11335 mRNA_2967 0.58 1.5
672,766 - 11335 mRNA_2967 0.67 -0.1
672,800 - 11335 mRNA_2967 0.70 -2.0
672,806 + 11335 mRNA_2967 0.70 -0.9
672,859 - 11335 mRNA_2967 0.74 0.8
673,013 - 11335 mRNA_2967 0.85 0.2
673,030 + 11335 mRNA_2967 0.86 1.8
673,186 - 0.4
673,219 + -0.4
673,343 + -0.1
673,353 + 0.8
673,441 - 1.6
673,555 - 0.0
673,614 - 2.0
673,624 + -1.0
673,627 - 0.0
673,645 + -2.8
673,807 - 0.2
673,841 - -0.1
673,983 - 0.0
673,995 + 0.1
674,045 - 0.2
674,086 - 0.9
674,122 + 0.2