Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2943

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608424 to 609485 11310 mRNA_2943: 11311 - KOG1902 Putative signal transduction protein involved in RNA splicing, at 609687 to 613545 11311

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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608,814 + 11310 mRNA_2942 0.37 -1.4
609,005 - 11310 mRNA_2942 0.55 0.8
609,117 - 11310 mRNA_2942 0.65 0.1
609,216 + 11310 mRNA_2942 0.75 -0.0
609,263 - 11310 mRNA_2942 0.79 -0.3
609,360 + 11310 mRNA_2942 0.88 1.7
609,376 - 11310 mRNA_2942 0.90 2.1
609,431 - -0.1
609,433 - -0.6
609,548 + 1.4
609,741 - -0.3
609,852 - -0.5
610,454 - 11311 mRNA_2943 0.20 -1.2
610,594 + 11311 mRNA_2943 0.24 -0.5
610,883 + 11311 mRNA_2943 0.31 0.7
610,919 + 11311 mRNA_2943 0.32 0.1
611,144 - 11311 mRNA_2943 0.38 2.6
611,448 + 11311 mRNA_2943 0.46 0.5
611,901 + 11311 mRNA_2943 0.57 -0.2
611,922 - 11311 mRNA_2943 0.58 -0.1
611,931 - 11311 mRNA_2943 0.58 1.1
612,206 + 11311 mRNA_2943 0.65 0.1
612,338 - 11311 mRNA_2943 0.69 2.2
612,629 + 11311 mRNA_2943 0.76 2.5
612,766 + 11311 mRNA_2943 0.80 0.4
612,898 - 11311 mRNA_2943 0.83 -0.3
613,065 + 11311 mRNA_2943 0.88 0.2
613,126 - 11311 mRNA_2943 0.89 0.1
613,181 - 0.1
613,181 + -1.5
613,197 - -0.4
613,340 - 1.1
613,457 - -1.0
613,472 - -0.3
613,571 + 0.5
613,708 - 1.1
613,719 - -0.1
613,786 - 1.5
613,787 + 0.4
613,787 + 0.9
613,788 + 0.9
613,805 - 1.0
613,816 - 1.4
613,821 + -0.2
613,822 + -1.0
613,885 - 1.6
613,997 + 0.7
614,029 - -2.2
614,044 + 0.1
614,053 - 0.1
614,054 + 0.7
614,055 + 0.2
614,071 + -1.6
614,072 + 1.5
614,072 + 1.3
614,072 - -0.2
614,073 - 0.5
614,076 - 2.1
614,076 - 0.3
614,078 - 1.7
614,084 - 0.1
614,101 - 0.7
614,101 + 0.9
614,101 + 0.9
614,103 - 0.0
614,104 - 0.1
614,105 - 0.0
614,109 - 0.7
614,408 + 0.6