Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2942

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607263 to 608329 11309 mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608424 to 609485 11310 mRNA_2943: 11311 - KOG1902 Putative signal transduction protein involved in RNA splicing, at 609687 to 613545 11311

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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607,498 - 11309 mRNA_2941 0.22 0.2
607,615 - 11309 mRNA_2941 0.33 0.0
607,649 - 11309 mRNA_2941 0.36 -0.5
607,948 + 11309 mRNA_2941 0.64 0.5
608,075 - 11309 mRNA_2941 0.76 -0.5
608,093 + 11309 mRNA_2941 0.78 -0.4
608,210 - 11309 mRNA_2941 0.89 0.4
608,371 + -1.6
608,520 - 0.3
608,524 + 0.9
608,666 - 11310 mRNA_2942 0.23 0.8
608,814 + 11310 mRNA_2942 0.37 -1.4
609,005 - 11310 mRNA_2942 0.55 0.8
609,117 - 11310 mRNA_2942 0.65 0.1
609,216 + 11310 mRNA_2942 0.75 -0.0
609,263 - 11310 mRNA_2942 0.79 -0.3
609,360 + 11310 mRNA_2942 0.88 1.7
609,376 - 11310 mRNA_2942 0.90 2.1
609,431 - -0.1
609,433 - -0.6
609,548 + 1.4
609,741 - -0.3
609,852 - -0.5
610,454 - 11311 mRNA_2943 0.20 -1.2