Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2938

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2937: 11305 - K14521 NAT10, KRE33 N-acetyltransferase 10, at 591164 to 595198 11305 mRNA_2938: 11306 - Hypothetical Protein, at 595318 to 600734 11306 mRNA_2939: 11307 - K17807 TAM41, MMP37 mitochondrial translocator assembly and maintenance protein 41, at 601286 to 603136 11307

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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595,381 + 0.3
595,445 - -0.3
595,631 + -0.4
596,097 + 11306 mRNA_2938 0.14 0.5
596,098 - 11306 mRNA_2938 0.14 -1.7
596,168 - 11306 mRNA_2938 0.16 0.2
596,210 - 11306 mRNA_2938 0.16 0.4
596,294 + 11306 mRNA_2938 0.18 0.6
596,485 + 11306 mRNA_2938 0.22 0.5
596,498 - 11306 mRNA_2938 0.22 2.6
596,534 + 11306 mRNA_2938 0.22 -0.2
596,604 + 11306 mRNA_2938 0.24 -2.0
596,644 + 11306 mRNA_2938 0.24 -0.3
596,644 + 11306 mRNA_2938 0.24 1.8
596,656 + 11306 mRNA_2938 0.25 1.3
596,672 + 11306 mRNA_2938 0.25 2.1
596,779 - 11306 mRNA_2938 0.27 -0.5
596,791 - 11306 mRNA_2938 0.27 -0.7
596,832 + 11306 mRNA_2938 0.28 -1.5
597,136 + 11306 mRNA_2938 0.34 2.4
597,423 + 11306 mRNA_2938 0.39 -0.9
597,430 + 11306 mRNA_2938 0.39 0.0
597,716 + 11306 mRNA_2938 0.44 -0.3
597,895 - 11306 mRNA_2938 0.48 0.8
597,965 + 11306 mRNA_2938 0.49 2.5
598,015 - 11306 mRNA_2938 0.50 1.8
598,102 - 11306 mRNA_2938 0.51 -1.1
598,156 - 11306 mRNA_2938 0.52 -2.0
598,609 - 11306 mRNA_2938 0.61 0.2
598,723 + 11306 mRNA_2938 0.63 -0.3
598,749 - 11306 mRNA_2938 0.63 -0.5
599,017 + 11306 mRNA_2938 0.68 0.5
599,030 + 11306 mRNA_2938 0.69 1.3
599,196 - 11306 mRNA_2938 0.72 -0.0
599,238 + 11306 mRNA_2938 0.72 -1.4
599,324 - 11306 mRNA_2938 0.74 -0.4
599,343 - 11306 mRNA_2938 0.74 -2.1
599,343 - 11306 mRNA_2938 0.74 -0.3
599,377 + 11306 mRNA_2938 0.75 0.4
599,379 + 11306 mRNA_2938 0.75 0.8
599,629 - 11306 mRNA_2938 0.80 0.4
599,632 + 11306 mRNA_2938 0.80 1.1
599,643 + 11306 mRNA_2938 0.80 2.2
599,698 + 11306 mRNA_2938 0.81 -0.1
599,698 + 11306 mRNA_2938 0.81 2.8
599,838 - 11306 mRNA_2938 0.83 1.8
600,943 - 0.5
600,960 - 0.4
601,002 + -1.4
601,166 - 0.5
601,185 - -1.7